Hb_009785_020

Information

Type -
Description -
Location Contig9785: 11397-12191
Sequence    

Annotation

kegg
ID rcu:RCOM_1504840
description hypothetical protein
nr
ID XP_011043027.1
description PREDICTED: nucleolin [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9RA96
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1504840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009785_020 0.0 - - PREDICTED: nucleolin [Populus euphratica]
2 Hb_167136_010 0.1210626726 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_004372_050 0.1644220641 - - putative receptor-like protein kinase [Morus notabilis]
4 Hb_002990_020 0.1780055856 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
5 Hb_002471_280 0.1854435245 - - PREDICTED: cyclin-SDS [Jatropha curcas]
6 Hb_002890_350 0.1862890179 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_004566_050 0.2096124225 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_111985_030 0.2096141852 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_001318_060 0.2103299973 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
10 Hb_003410_020 0.2105584525 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_034909_010 0.2105692965 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_010435_010 0.2111952722 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_004643_020 0.2135590713 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
14 Hb_018105_010 0.2138207648 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
15 Hb_001999_050 0.2142369522 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
16 Hb_000269_040 0.2143563142 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_071998_010 0.2149480902 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
18 Hb_011888_010 0.2158400089 - - Receptor like protein 46, putative [Theobroma cacao]
19 Hb_000417_330 0.2208005884 - - -
20 Hb_008576_010 0.2227983326 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_009785_020 Hb_009785_020 Hb_167136_010 Hb_167136_010 Hb_009785_020--Hb_167136_010 Hb_004372_050 Hb_004372_050 Hb_009785_020--Hb_004372_050 Hb_002990_020 Hb_002990_020 Hb_009785_020--Hb_002990_020 Hb_002471_280 Hb_002471_280 Hb_009785_020--Hb_002471_280 Hb_002890_350 Hb_002890_350 Hb_009785_020--Hb_002890_350 Hb_004566_050 Hb_004566_050 Hb_009785_020--Hb_004566_050 Hb_167136_010--Hb_002471_280 Hb_167136_010--Hb_004372_050 Hb_167136_010--Hb_002990_020 Hb_004643_020 Hb_004643_020 Hb_167136_010--Hb_004643_020 Hb_000138_180 Hb_000138_180 Hb_167136_010--Hb_000138_180 Hb_004372_050--Hb_002990_020 Hb_000289_090 Hb_000289_090 Hb_004372_050--Hb_000289_090 Hb_010863_070 Hb_010863_070 Hb_004372_050--Hb_010863_070 Hb_004372_050--Hb_002471_280 Hb_004372_050--Hb_004643_020 Hb_002990_020--Hb_004643_020 Hb_002990_020--Hb_000138_180 Hb_006827_010 Hb_006827_010 Hb_002990_020--Hb_006827_010 Hb_002990_020--Hb_002471_280 Hb_012691_060 Hb_012691_060 Hb_002471_280--Hb_012691_060 Hb_002471_280--Hb_000138_180 Hb_043127_010 Hb_043127_010 Hb_002471_280--Hb_043127_010 Hb_003867_030 Hb_003867_030 Hb_002890_350--Hb_003867_030 Hb_000640_280 Hb_000640_280 Hb_002890_350--Hb_000640_280 Hb_009403_010 Hb_009403_010 Hb_002890_350--Hb_009403_010 Hb_034013_010 Hb_034013_010 Hb_002890_350--Hb_034013_010 Hb_000392_510 Hb_000392_510 Hb_002890_350--Hb_000392_510 Hb_111985_030 Hb_111985_030 Hb_004566_050--Hb_111985_030 Hb_001318_060 Hb_001318_060 Hb_004566_050--Hb_001318_060 Hb_003410_020 Hb_003410_020 Hb_004566_050--Hb_003410_020 Hb_034909_010 Hb_034909_010 Hb_004566_050--Hb_034909_010 Hb_010435_010 Hb_010435_010 Hb_004566_050--Hb_010435_010 Hb_071998_010 Hb_071998_010 Hb_004566_050--Hb_071998_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.26435 0 0.0561104 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.338561

CAGE analysis