Hb_000392_510

Information

Type -
Description -
Location Contig392: 394588-396391
Sequence    

Annotation

kegg
ID rcu:RCOM_1513700
description voltage-dependent anion-selective channel, putative
nr
ID XP_012080209.1
description PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
swissprot
ID P42056
description Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2
trembl
ID A0A067K8A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11584 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial outer membrane protein porin of 36 kda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_510 0.0 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
2 Hb_000286_180 0.1521424966 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
3 Hb_007137_020 0.1832655975 - - multicopper oxidase, putative [Ricinus communis]
4 Hb_001899_040 0.1846961515 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
5 Hb_002218_060 0.1873862667 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009898_060 0.2022132382 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
7 Hb_000640_280 0.2047976307 - - Stachyose synthase precursor, putative [Ricinus communis]
8 Hb_056506_010 0.2060706976 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
9 Hb_005048_080 0.2061949759 - - PREDICTED: PAP-specific phosphatase HAL2-like [Jatropha curcas]
10 Hb_002890_350 0.2072377781 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
11 Hb_003376_150 0.2112490265 - - PREDICTED: peroxidase 21 [Jatropha curcas]
12 Hb_003176_020 0.2141158308 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
13 Hb_006717_020 0.2153155798 - - calcium-dependent protein kinase [Hevea brasiliensis]
14 Hb_000029_180 0.2174357762 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
15 Hb_003867_030 0.2240238773 - - -
16 Hb_008195_020 0.2291527067 - - Vacuolar-processing enzyme precursor [Ricinus communis]
17 Hb_001989_080 0.2291953078 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000300_240 0.2294902897 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
19 Hb_000002_280 0.2305720081 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
20 Hb_001008_020 0.2330776024 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000392_510 Hb_000392_510 Hb_000286_180 Hb_000286_180 Hb_000392_510--Hb_000286_180 Hb_007137_020 Hb_007137_020 Hb_000392_510--Hb_007137_020 Hb_001899_040 Hb_001899_040 Hb_000392_510--Hb_001899_040 Hb_002218_060 Hb_002218_060 Hb_000392_510--Hb_002218_060 Hb_009898_060 Hb_009898_060 Hb_000392_510--Hb_009898_060 Hb_000640_280 Hb_000640_280 Hb_000392_510--Hb_000640_280 Hb_003176_020 Hb_003176_020 Hb_000286_180--Hb_003176_020 Hb_005048_080 Hb_005048_080 Hb_000286_180--Hb_005048_080 Hb_000029_180 Hb_000029_180 Hb_000286_180--Hb_000029_180 Hb_003376_150 Hb_003376_150 Hb_000286_180--Hb_003376_150 Hb_000286_180--Hb_002218_060 Hb_001008_020 Hb_001008_020 Hb_007137_020--Hb_001008_020 Hb_056506_010 Hb_056506_010 Hb_007137_020--Hb_056506_010 Hb_001989_080 Hb_001989_080 Hb_007137_020--Hb_001989_080 Hb_007137_020--Hb_000286_180 Hb_007137_020--Hb_009898_060 Hb_002571_050 Hb_002571_050 Hb_001899_040--Hb_002571_050 Hb_027337_050 Hb_027337_050 Hb_001899_040--Hb_027337_050 Hb_001899_040--Hb_009898_060 Hb_000300_240 Hb_000300_240 Hb_001899_040--Hb_000300_240 Hb_038190_030 Hb_038190_030 Hb_001899_040--Hb_038190_030 Hb_000002_280 Hb_000002_280 Hb_001899_040--Hb_000002_280 Hb_002218_060--Hb_000029_180 Hb_000117_110 Hb_000117_110 Hb_002218_060--Hb_000117_110 Hb_001677_130 Hb_001677_130 Hb_002218_060--Hb_001677_130 Hb_003867_030 Hb_003867_030 Hb_002218_060--Hb_003867_030 Hb_000398_200 Hb_000398_200 Hb_002218_060--Hb_000398_200 Hb_030370_070 Hb_030370_070 Hb_002218_060--Hb_030370_070 Hb_009898_060--Hb_056506_010 Hb_000061_110 Hb_000061_110 Hb_009898_060--Hb_000061_110 Hb_003649_030 Hb_003649_030 Hb_009898_060--Hb_003649_030 Hb_002056_140 Hb_002056_140 Hb_009898_060--Hb_002056_140 Hb_000269_040 Hb_000269_040 Hb_009898_060--Hb_000269_040 Hb_000640_280--Hb_000002_280 Hb_000243_310 Hb_000243_310 Hb_000640_280--Hb_000243_310 Hb_002890_350 Hb_002890_350 Hb_000640_280--Hb_002890_350 Hb_000640_280--Hb_000300_240 Hb_011344_150 Hb_011344_150 Hb_000640_280--Hb_011344_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.901001 0 0.120184 0.0275207 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0400303 0.399746

CAGE analysis