Hb_000300_240

Information

Type -
Description -
Location Contig300: 202381-204195
Sequence    

Annotation

kegg
ID rcu:RCOM_1321050
description Sodium/potassium/calcium exchanger 6 precursor, putative
nr
ID XP_002525682.1
description Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
swissprot
ID Q9FKP1
description Cation/calcium exchanger 1 OS=Arabidopsis thaliana GN=CCX1 PE=2 SV=1
trembl
ID B9SI63
description Sodium/potassium/calcium exchanger 6, putative OS=Ricinus communis GN=RCOM_1321050 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation calcium exchanger 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_240 0.0 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
2 Hb_000002_280 0.1132512037 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
3 Hb_166828_010 0.1292855611 - - -
4 Hb_002092_140 0.133344825 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
5 Hb_000320_170 0.1364793269 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002836_030 0.1428711469 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
7 Hb_003582_050 0.1446306554 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
8 Hb_004191_030 0.1471557682 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
9 Hb_001899_040 0.1481357342 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
10 Hb_144813_010 0.1513266557 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
11 Hb_002571_050 0.1587393019 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
12 Hb_011888_010 0.1710683279 - - Receptor like protein 46, putative [Theobroma cacao]
13 Hb_071998_010 0.1737201432 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
14 Hb_080873_010 0.1811508911 - - -
15 Hb_002221_020 0.181243026 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
16 Hb_002056_140 0.1837509968 - - -
17 Hb_005852_010 0.1931161758 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_038190_030 0.1934053837 - - -
19 Hb_034909_010 0.1937521051 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_003410_020 0.1938389667 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_000300_240 Hb_000300_240 Hb_000002_280 Hb_000002_280 Hb_000300_240--Hb_000002_280 Hb_166828_010 Hb_166828_010 Hb_000300_240--Hb_166828_010 Hb_002092_140 Hb_002092_140 Hb_000300_240--Hb_002092_140 Hb_000320_170 Hb_000320_170 Hb_000300_240--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_000300_240--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_000300_240--Hb_003582_050 Hb_000002_280--Hb_002092_140 Hb_000002_280--Hb_166828_010 Hb_002571_050 Hb_002571_050 Hb_000002_280--Hb_002571_050 Hb_080873_010 Hb_080873_010 Hb_000002_280--Hb_080873_010 Hb_010091_040 Hb_010091_040 Hb_000002_280--Hb_010091_040 Hb_166828_010--Hb_002092_140 Hb_166828_010--Hb_000320_170 Hb_166828_010--Hb_002836_030 Hb_166828_010--Hb_003582_050 Hb_166828_010--Hb_080873_010 Hb_144813_010 Hb_144813_010 Hb_166828_010--Hb_144813_010 Hb_002092_140--Hb_080873_010 Hb_002092_140--Hb_000320_170 Hb_002092_140--Hb_002836_030 Hb_002092_140--Hb_003582_050 Hb_000320_170--Hb_002836_030 Hb_000320_170--Hb_003582_050 Hb_000320_170--Hb_144813_010 Hb_011888_010 Hb_011888_010 Hb_000320_170--Hb_011888_010 Hb_071998_010 Hb_071998_010 Hb_000320_170--Hb_071998_010 Hb_002836_030--Hb_003582_050 Hb_002836_030--Hb_144813_010 Hb_002836_030--Hb_011888_010 Hb_002836_030--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_002836_030--Hb_034909_010 Hb_003582_050--Hb_144813_010 Hb_003582_050--Hb_011888_010 Hb_003582_050--Hb_071998_010 Hb_003582_050--Hb_034909_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.497 0 0.00794949 0 0.0107641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0251489 0 0 0.189118 2.58483

CAGE analysis