Hb_144813_010

Information

Type -
Description -
Location Contig144813: 40-615
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID XP_012461546.1
description PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M1DSU3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043417 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105793197

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144813_010 0.0 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
2 Hb_003582_050 0.0131979601 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
3 Hb_002836_030 0.0169848115 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
4 Hb_000320_170 0.0325571894 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011888_010 0.0326747677 - - Receptor like protein 46, putative [Theobroma cacao]
6 Hb_071998_010 0.036644084 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
7 Hb_034909_010 0.0648027749 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_003410_020 0.0649193821 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_004566_050 0.0860104766 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_111985_030 0.0864249067 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
11 Hb_001318_060 0.1030071531 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
12 Hb_166828_010 0.1077584114 - - -
13 Hb_010435_010 0.1116113495 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_002092_140 0.1241033195 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
15 Hb_000300_240 0.1513266557 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
16 Hb_000417_330 0.1559293055 - - -
17 Hb_004191_030 0.1592237606 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
18 Hb_008576_010 0.1621362817 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_149253_010 0.1663325583 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
20 Hb_003943_060 0.1671112134 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]

Gene co-expression network

sample Hb_144813_010 Hb_144813_010 Hb_003582_050 Hb_003582_050 Hb_144813_010--Hb_003582_050 Hb_002836_030 Hb_002836_030 Hb_144813_010--Hb_002836_030 Hb_000320_170 Hb_000320_170 Hb_144813_010--Hb_000320_170 Hb_011888_010 Hb_011888_010 Hb_144813_010--Hb_011888_010 Hb_071998_010 Hb_071998_010 Hb_144813_010--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_144813_010--Hb_034909_010 Hb_003582_050--Hb_002836_030 Hb_003582_050--Hb_000320_170 Hb_003582_050--Hb_011888_010 Hb_003582_050--Hb_071998_010 Hb_003582_050--Hb_034909_010 Hb_002836_030--Hb_000320_170 Hb_002836_030--Hb_011888_010 Hb_002836_030--Hb_071998_010 Hb_002836_030--Hb_034909_010 Hb_000320_170--Hb_011888_010 Hb_000320_170--Hb_071998_010 Hb_166828_010 Hb_166828_010 Hb_000320_170--Hb_166828_010 Hb_011888_010--Hb_071998_010 Hb_011888_010--Hb_034909_010 Hb_003410_020 Hb_003410_020 Hb_011888_010--Hb_003410_020 Hb_071998_010--Hb_034909_010 Hb_071998_010--Hb_003410_020 Hb_004566_050 Hb_004566_050 Hb_071998_010--Hb_004566_050 Hb_034909_010--Hb_003410_020 Hb_034909_010--Hb_004566_050 Hb_111985_030 Hb_111985_030 Hb_034909_010--Hb_111985_030 Hb_001318_060 Hb_001318_060 Hb_034909_010--Hb_001318_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.189435 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.162174

CAGE analysis