Hb_011888_010

Information

Type -
Description -
Location Contig11888: 21018-23342
Sequence    

Annotation

kegg
ID tcc:TCM_026464
description Receptor like protein 46, putative
nr
ID XP_007030719.1
description Receptor like protein 46, putative [Theobroma cacao]
swissprot
ID C0LGS2
description Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=2 SV=1
trembl
ID A0A061F2G1
description Receptor like protein 46, putative OS=Theobroma cacao GN=TCM_026464 PE=4 SV=1
Gene Ontology
ID GO:0007165
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011888_010 0.0 - - Receptor like protein 46, putative [Theobroma cacao]
2 Hb_071998_010 0.0039709659 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
3 Hb_034909_010 0.0321516028 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_003410_020 0.0322683383 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_144813_010 0.0326747677 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
6 Hb_003582_050 0.0458658192 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
7 Hb_002836_030 0.0496499476 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_004566_050 0.0533877396 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_111985_030 0.053802828 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
10 Hb_000320_170 0.0652076246 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001318_060 0.0704146734 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
12 Hb_010435_010 0.0790367515 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000417_330 0.1234748315 - - -
14 Hb_008576_010 0.1297024801 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_149253_010 0.1339132835 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
16 Hb_003943_060 0.1346946835 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
17 Hb_012438_020 0.1360147324 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_001383_040 0.1364197091 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
19 Hb_166828_010 0.1402555232 - - -
20 Hb_004191_030 0.1525696294 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]

Gene co-expression network

sample Hb_011888_010 Hb_011888_010 Hb_071998_010 Hb_071998_010 Hb_011888_010--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_011888_010--Hb_034909_010 Hb_003410_020 Hb_003410_020 Hb_011888_010--Hb_003410_020 Hb_144813_010 Hb_144813_010 Hb_011888_010--Hb_144813_010 Hb_003582_050 Hb_003582_050 Hb_011888_010--Hb_003582_050 Hb_002836_030 Hb_002836_030 Hb_011888_010--Hb_002836_030 Hb_071998_010--Hb_034909_010 Hb_071998_010--Hb_003410_020 Hb_071998_010--Hb_144813_010 Hb_004566_050 Hb_004566_050 Hb_071998_010--Hb_004566_050 Hb_071998_010--Hb_003582_050 Hb_034909_010--Hb_003410_020 Hb_034909_010--Hb_004566_050 Hb_111985_030 Hb_111985_030 Hb_034909_010--Hb_111985_030 Hb_001318_060 Hb_001318_060 Hb_034909_010--Hb_001318_060 Hb_003410_020--Hb_004566_050 Hb_003410_020--Hb_111985_030 Hb_003410_020--Hb_001318_060 Hb_144813_010--Hb_003582_050 Hb_144813_010--Hb_002836_030 Hb_000320_170 Hb_000320_170 Hb_144813_010--Hb_000320_170 Hb_144813_010--Hb_034909_010 Hb_003582_050--Hb_002836_030 Hb_003582_050--Hb_000320_170 Hb_003582_050--Hb_034909_010 Hb_002836_030--Hb_000320_170 Hb_002836_030--Hb_071998_010 Hb_002836_030--Hb_034909_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0319693 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0319273

CAGE analysis