Hb_071998_010

Information

Type -
Description -
Location Contig71998: 22-616
Sequence    

Annotation

kegg
ID cmo:103498182
description uncharacterized LOC103498182
nr
ID XP_012487761.1
description PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0PHM9
description Pyridoxal-phosphate-dependent serine hydroxymethyltransferase OS=Gossypium arboreum GN=F383_30526 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071998_010 0.0 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
2 Hb_011888_010 0.0039709659 - - Receptor like protein 46, putative [Theobroma cacao]
3 Hb_034909_010 0.0281818858 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_003410_020 0.0282986311 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_144813_010 0.036644084 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
6 Hb_004566_050 0.0494204194 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_003582_050 0.0498336323 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
8 Hb_111985_030 0.0498355672 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_002836_030 0.0536172398 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_001318_060 0.0664501906 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
11 Hb_000320_170 0.0691723528 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010435_010 0.0750740207 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000417_330 0.1195245859 - - -
14 Hb_008576_010 0.1257544601 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_149253_010 0.1299668365 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
16 Hb_003943_060 0.1307485344 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
17 Hb_012438_020 0.1320690912 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_001383_040 0.1324742248 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
19 Hb_166828_010 0.1441979951 - - -
20 Hb_127835_030 0.1502702172 - - -

Gene co-expression network

sample Hb_071998_010 Hb_071998_010 Hb_011888_010 Hb_011888_010 Hb_071998_010--Hb_011888_010 Hb_034909_010 Hb_034909_010 Hb_071998_010--Hb_034909_010 Hb_003410_020 Hb_003410_020 Hb_071998_010--Hb_003410_020 Hb_144813_010 Hb_144813_010 Hb_071998_010--Hb_144813_010 Hb_004566_050 Hb_004566_050 Hb_071998_010--Hb_004566_050 Hb_003582_050 Hb_003582_050 Hb_071998_010--Hb_003582_050 Hb_011888_010--Hb_034909_010 Hb_011888_010--Hb_003410_020 Hb_011888_010--Hb_144813_010 Hb_011888_010--Hb_003582_050 Hb_002836_030 Hb_002836_030 Hb_011888_010--Hb_002836_030 Hb_034909_010--Hb_003410_020 Hb_034909_010--Hb_004566_050 Hb_111985_030 Hb_111985_030 Hb_034909_010--Hb_111985_030 Hb_001318_060 Hb_001318_060 Hb_034909_010--Hb_001318_060 Hb_003410_020--Hb_004566_050 Hb_003410_020--Hb_111985_030 Hb_003410_020--Hb_001318_060 Hb_144813_010--Hb_003582_050 Hb_144813_010--Hb_002836_030 Hb_000320_170 Hb_000320_170 Hb_144813_010--Hb_000320_170 Hb_144813_010--Hb_034909_010 Hb_004566_050--Hb_111985_030 Hb_004566_050--Hb_001318_060 Hb_010435_010 Hb_010435_010 Hb_004566_050--Hb_010435_010 Hb_003582_050--Hb_002836_030 Hb_003582_050--Hb_000320_170 Hb_003582_050--Hb_034909_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.176687 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.179786

CAGE analysis