Hb_010435_010

Information

Type -
Description -
Location Contig10435: 4165-8901
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010435_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001318_060 0.0086392014 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
3 Hb_111985_030 0.0252719782 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
4 Hb_004566_050 0.0256873886 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000417_330 0.0445966535 - - -
6 Hb_003410_020 0.0468104181 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_034909_010 0.0469271047 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_008576_010 0.0508562739 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_149253_010 0.0550901029 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
10 Hb_003943_060 0.0558759016 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
11 Hb_012438_020 0.0572034717 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_001383_040 0.0576107785 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
13 Hb_071998_010 0.0750740207 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
14 Hb_127835_030 0.0755123872 - - -
15 Hb_011888_010 0.0790367515 - - Receptor like protein 46, putative [Theobroma cacao]
16 Hb_160879_010 0.0844979194 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
17 Hb_004553_010 0.0882548861 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
18 Hb_185467_040 0.0883592686 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
19 Hb_003766_020 0.0941717635 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
20 Hb_004400_050 0.095107479 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_010435_010 Hb_010435_010 Hb_001318_060 Hb_001318_060 Hb_010435_010--Hb_001318_060 Hb_111985_030 Hb_111985_030 Hb_010435_010--Hb_111985_030 Hb_004566_050 Hb_004566_050 Hb_010435_010--Hb_004566_050 Hb_000417_330 Hb_000417_330 Hb_010435_010--Hb_000417_330 Hb_003410_020 Hb_003410_020 Hb_010435_010--Hb_003410_020 Hb_034909_010 Hb_034909_010 Hb_010435_010--Hb_034909_010 Hb_001318_060--Hb_111985_030 Hb_001318_060--Hb_004566_050 Hb_001318_060--Hb_003410_020 Hb_001318_060--Hb_034909_010 Hb_001318_060--Hb_000417_330 Hb_111985_030--Hb_004566_050 Hb_111985_030--Hb_003410_020 Hb_111985_030--Hb_034909_010 Hb_071998_010 Hb_071998_010 Hb_111985_030--Hb_071998_010 Hb_004566_050--Hb_003410_020 Hb_004566_050--Hb_034909_010 Hb_004566_050--Hb_071998_010 Hb_008576_010 Hb_008576_010 Hb_000417_330--Hb_008576_010 Hb_149253_010 Hb_149253_010 Hb_000417_330--Hb_149253_010 Hb_003943_060 Hb_003943_060 Hb_000417_330--Hb_003943_060 Hb_012438_020 Hb_012438_020 Hb_000417_330--Hb_012438_020 Hb_001383_040 Hb_001383_040 Hb_000417_330--Hb_001383_040 Hb_127835_030 Hb_127835_030 Hb_000417_330--Hb_127835_030 Hb_003410_020--Hb_034909_010 Hb_003410_020--Hb_071998_010 Hb_011888_010 Hb_011888_010 Hb_003410_020--Hb_011888_010 Hb_034909_010--Hb_071998_010 Hb_034909_010--Hb_011888_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0121434 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0176393

CAGE analysis