Hb_000417_330

Information

Type -
Description -
Location Contig417: 267164-268066
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_330 0.0 - - -
2 Hb_008576_010 0.0062652453 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_149253_010 0.0105036987 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
4 Hb_003943_060 0.0112904293 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
5 Hb_012438_020 0.0126196262 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_001383_040 0.0130274453 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
7 Hb_127835_030 0.0309578371 - - -
8 Hb_160879_010 0.039962549 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
9 Hb_004553_010 0.0437284998 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
10 Hb_185467_040 0.0438331401 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_010435_010 0.0445966535 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_003766_020 0.0496607006 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
13 Hb_004400_050 0.0505989724 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
14 Hb_001318_060 0.0532280771 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
15 Hb_111985_030 0.0698390918 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_004566_050 0.0702538459 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000493_110 0.075250691 - - hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
18 Hb_031964_010 0.078788151 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
19 Hb_003410_020 0.0913364146 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_034909_010 0.0914528394 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000417_330 Hb_000417_330 Hb_008576_010 Hb_008576_010 Hb_000417_330--Hb_008576_010 Hb_149253_010 Hb_149253_010 Hb_000417_330--Hb_149253_010 Hb_003943_060 Hb_003943_060 Hb_000417_330--Hb_003943_060 Hb_012438_020 Hb_012438_020 Hb_000417_330--Hb_012438_020 Hb_001383_040 Hb_001383_040 Hb_000417_330--Hb_001383_040 Hb_127835_030 Hb_127835_030 Hb_000417_330--Hb_127835_030 Hb_008576_010--Hb_149253_010 Hb_008576_010--Hb_003943_060 Hb_008576_010--Hb_012438_020 Hb_008576_010--Hb_001383_040 Hb_008576_010--Hb_127835_030 Hb_149253_010--Hb_003943_060 Hb_149253_010--Hb_012438_020 Hb_149253_010--Hb_001383_040 Hb_149253_010--Hb_127835_030 Hb_003943_060--Hb_012438_020 Hb_003943_060--Hb_001383_040 Hb_003943_060--Hb_127835_030 Hb_012438_020--Hb_001383_040 Hb_012438_020--Hb_127835_030 Hb_001383_040--Hb_127835_030 Hb_160879_010 Hb_160879_010 Hb_127835_030--Hb_160879_010 Hb_004553_010 Hb_004553_010 Hb_127835_030--Hb_004553_010 Hb_185467_040 Hb_185467_040 Hb_127835_030--Hb_185467_040 Hb_003766_020 Hb_003766_020 Hb_127835_030--Hb_003766_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.057227 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.1032

CAGE analysis