Hb_185467_040

Information

Type -
Description -
Location Contig185467: 30342-31610
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185467_040 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_004553_010 0.0001047296 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
3 Hb_160879_010 0.0038735947 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
4 Hb_003766_020 0.0058332388 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
5 Hb_004400_050 0.0067725563 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
6 Hb_127835_030 0.0128829699 - - -
7 Hb_001383_040 0.0308132735 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
8 Hb_012438_020 0.0312209495 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000493_110 0.0314652733 - - hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
10 Hb_003943_060 0.0325496372 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
11 Hb_149253_010 0.0333360358 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
12 Hb_031964_010 0.0350108266 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
13 Hb_008576_010 0.0375723098 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000417_330 0.0438331401 - - -
15 Hb_000482_100 0.0686661077 - - -
16 Hb_189099_010 0.0758396715 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
17 Hb_001629_070 0.0847747014 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
18 Hb_068578_010 0.0850329004 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
19 Hb_010435_010 0.0883592686 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002982_060 0.0890641783 - - hypothetical protein JCGZ_19604 [Jatropha curcas]

Gene co-expression network

sample Hb_185467_040 Hb_185467_040 Hb_004553_010 Hb_004553_010 Hb_185467_040--Hb_004553_010 Hb_160879_010 Hb_160879_010 Hb_185467_040--Hb_160879_010 Hb_003766_020 Hb_003766_020 Hb_185467_040--Hb_003766_020 Hb_004400_050 Hb_004400_050 Hb_185467_040--Hb_004400_050 Hb_127835_030 Hb_127835_030 Hb_185467_040--Hb_127835_030 Hb_001383_040 Hb_001383_040 Hb_185467_040--Hb_001383_040 Hb_004553_010--Hb_160879_010 Hb_004553_010--Hb_003766_020 Hb_004553_010--Hb_004400_050 Hb_004553_010--Hb_127835_030 Hb_004553_010--Hb_001383_040 Hb_160879_010--Hb_127835_030 Hb_160879_010--Hb_003766_020 Hb_160879_010--Hb_004400_050 Hb_160879_010--Hb_001383_040 Hb_003766_020--Hb_004400_050 Hb_003766_020--Hb_127835_030 Hb_000493_110 Hb_000493_110 Hb_003766_020--Hb_000493_110 Hb_004400_050--Hb_127835_030 Hb_004400_050--Hb_000493_110 Hb_127835_030--Hb_001383_040 Hb_012438_020 Hb_012438_020 Hb_127835_030--Hb_012438_020 Hb_001383_040--Hb_012438_020 Hb_003943_060 Hb_003943_060 Hb_001383_040--Hb_003943_060 Hb_149253_010 Hb_149253_010 Hb_001383_040--Hb_149253_010 Hb_008576_010 Hb_008576_010 Hb_001383_040--Hb_008576_010 Hb_000417_330 Hb_000417_330 Hb_001383_040--Hb_000417_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0276022 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0619837

CAGE analysis