Hb_004400_050

Information

Type -
Description -
Location Contig4400: 71472-76169
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID AAX95261.1
description retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
swissprot
ID P10272
description Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1
trembl
ID Q53JS3
description Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g26500 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004400_050 0.0 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
2 Hb_003766_020 0.000939335 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
3 Hb_185467_040 0.0067725563 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_004553_010 0.0068772835 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
5 Hb_160879_010 0.0106460203 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
6 Hb_127835_030 0.019654732 - - -
7 Hb_000493_110 0.0246952836 - - hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
8 Hb_031964_010 0.0282415503 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
9 Hb_001383_040 0.0375822693 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
10 Hb_012438_020 0.0379898608 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_003943_060 0.0393182662 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
12 Hb_149253_010 0.0401044929 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
13 Hb_008576_010 0.0443397814 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000417_330 0.0505989724 - - -
15 Hb_000482_100 0.0619082577 - - -
16 Hb_189099_010 0.0690854086 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
17 Hb_001629_070 0.0780255093 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
18 Hb_068578_010 0.0782838649 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
19 Hb_002982_060 0.0823176644 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
20 Hb_009813_040 0.088675415 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_004400_050 Hb_004400_050 Hb_003766_020 Hb_003766_020 Hb_004400_050--Hb_003766_020 Hb_185467_040 Hb_185467_040 Hb_004400_050--Hb_185467_040 Hb_004553_010 Hb_004553_010 Hb_004400_050--Hb_004553_010 Hb_160879_010 Hb_160879_010 Hb_004400_050--Hb_160879_010 Hb_127835_030 Hb_127835_030 Hb_004400_050--Hb_127835_030 Hb_000493_110 Hb_000493_110 Hb_004400_050--Hb_000493_110 Hb_003766_020--Hb_185467_040 Hb_003766_020--Hb_004553_010 Hb_003766_020--Hb_160879_010 Hb_003766_020--Hb_127835_030 Hb_003766_020--Hb_000493_110 Hb_185467_040--Hb_004553_010 Hb_185467_040--Hb_160879_010 Hb_185467_040--Hb_127835_030 Hb_001383_040 Hb_001383_040 Hb_185467_040--Hb_001383_040 Hb_004553_010--Hb_160879_010 Hb_004553_010--Hb_127835_030 Hb_004553_010--Hb_001383_040 Hb_160879_010--Hb_127835_030 Hb_160879_010--Hb_001383_040 Hb_127835_030--Hb_001383_040 Hb_012438_020 Hb_012438_020 Hb_127835_030--Hb_012438_020 Hb_031964_010 Hb_031964_010 Hb_000493_110--Hb_031964_010 Hb_000493_110--Hb_185467_040 Hb_000493_110--Hb_004553_010 Hb_000493_110--Hb_160879_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00761059 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0176931

CAGE analysis