Hb_000493_110

Information

Type -
Description -
Location Contig493: 174803-175069
Sequence    

Annotation

kegg
ID pxb:103945591
description uncharacterized protein At5g39865-like
nr
ID KCW90068.1
description hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
swissprot
ID Q9LH89
description Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=3 SV=1
trembl
ID A0A059DH32
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02264 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000493_110 0.0 - - hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
2 Hb_031964_010 0.0035475272 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
3 Hb_004400_050 0.0246952836 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
4 Hb_003766_020 0.0256343265 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
5 Hb_185467_040 0.0314652733 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_004553_010 0.0315699525 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
7 Hb_160879_010 0.0353367941 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
8 Hb_000482_100 0.0372432879 - - -
9 Hb_127835_030 0.0443396804 - - -
10 Hb_189099_010 0.0444308728 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
11 Hb_001629_070 0.0533861979 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
12 Hb_068578_010 0.053645031 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
13 Hb_002982_060 0.057686565 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
14 Hb_001383_040 0.0622503846 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
15 Hb_012438_020 0.0626575148 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_003943_060 0.0639843931 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
17 Hb_009813_040 0.064057585 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
18 Hb_149253_010 0.064769699 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
19 Hb_099586_010 0.0653215244 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
20 Hb_000001_030 0.0678344981 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_000493_110 Hb_000493_110 Hb_031964_010 Hb_031964_010 Hb_000493_110--Hb_031964_010 Hb_004400_050 Hb_004400_050 Hb_000493_110--Hb_004400_050 Hb_003766_020 Hb_003766_020 Hb_000493_110--Hb_003766_020 Hb_185467_040 Hb_185467_040 Hb_000493_110--Hb_185467_040 Hb_004553_010 Hb_004553_010 Hb_000493_110--Hb_004553_010 Hb_160879_010 Hb_160879_010 Hb_000493_110--Hb_160879_010 Hb_031964_010--Hb_004400_050 Hb_031964_010--Hb_003766_020 Hb_000482_100 Hb_000482_100 Hb_031964_010--Hb_000482_100 Hb_031964_010--Hb_185467_040 Hb_031964_010--Hb_004553_010 Hb_004400_050--Hb_003766_020 Hb_004400_050--Hb_185467_040 Hb_004400_050--Hb_004553_010 Hb_004400_050--Hb_160879_010 Hb_127835_030 Hb_127835_030 Hb_004400_050--Hb_127835_030 Hb_003766_020--Hb_185467_040 Hb_003766_020--Hb_004553_010 Hb_003766_020--Hb_160879_010 Hb_003766_020--Hb_127835_030 Hb_185467_040--Hb_004553_010 Hb_185467_040--Hb_160879_010 Hb_185467_040--Hb_127835_030 Hb_001383_040 Hb_001383_040 Hb_185467_040--Hb_001383_040 Hb_004553_010--Hb_160879_010 Hb_004553_010--Hb_127835_030 Hb_004553_010--Hb_001383_040 Hb_160879_010--Hb_127835_030 Hb_160879_010--Hb_001383_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.219656 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.580692

CAGE analysis