Hb_127835_030

Information

Type -
Description -
Location Contig127835: 47644-48834
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127835_030 0.0 - - -
2 Hb_160879_010 0.0090095809 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
3 Hb_004553_010 0.0127782482 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
4 Hb_185467_040 0.0128829699 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_001383_040 0.0179334682 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
6 Hb_012438_020 0.0183412576 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_003766_020 0.0187155581 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
8 Hb_004400_050 0.019654732 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
9 Hb_003943_060 0.0196703274 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
10 Hb_149253_010 0.020456961 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
11 Hb_008576_010 0.0246946161 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000417_330 0.0309578371 - - -
13 Hb_000493_110 0.0443396804 - - hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
14 Hb_031964_010 0.0478834645 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
15 Hb_010435_010 0.0755123872 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000482_100 0.08151315 - - -
17 Hb_001318_060 0.0841303259 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
18 Hb_189099_010 0.0886790847 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
19 Hb_001629_070 0.0976034767 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
20 Hb_068578_010 0.0978613491 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]

Gene co-expression network

sample Hb_127835_030 Hb_127835_030 Hb_160879_010 Hb_160879_010 Hb_127835_030--Hb_160879_010 Hb_004553_010 Hb_004553_010 Hb_127835_030--Hb_004553_010 Hb_185467_040 Hb_185467_040 Hb_127835_030--Hb_185467_040 Hb_001383_040 Hb_001383_040 Hb_127835_030--Hb_001383_040 Hb_012438_020 Hb_012438_020 Hb_127835_030--Hb_012438_020 Hb_003766_020 Hb_003766_020 Hb_127835_030--Hb_003766_020 Hb_160879_010--Hb_004553_010 Hb_160879_010--Hb_185467_040 Hb_160879_010--Hb_003766_020 Hb_004400_050 Hb_004400_050 Hb_160879_010--Hb_004400_050 Hb_160879_010--Hb_001383_040 Hb_004553_010--Hb_185467_040 Hb_004553_010--Hb_003766_020 Hb_004553_010--Hb_004400_050 Hb_004553_010--Hb_001383_040 Hb_185467_040--Hb_003766_020 Hb_185467_040--Hb_004400_050 Hb_185467_040--Hb_001383_040 Hb_001383_040--Hb_012438_020 Hb_003943_060 Hb_003943_060 Hb_001383_040--Hb_003943_060 Hb_149253_010 Hb_149253_010 Hb_001383_040--Hb_149253_010 Hb_008576_010 Hb_008576_010 Hb_001383_040--Hb_008576_010 Hb_000417_330 Hb_000417_330 Hb_001383_040--Hb_000417_330 Hb_012438_020--Hb_003943_060 Hb_012438_020--Hb_149253_010 Hb_012438_020--Hb_008576_010 Hb_012438_020--Hb_000417_330 Hb_003766_020--Hb_004400_050 Hb_000493_110 Hb_000493_110 Hb_003766_020--Hb_000493_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0672149 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.141396

CAGE analysis