Hb_008576_010

Information

Type -
Description -
Location Contig8576: 18748-23453
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008576_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_149253_010 0.0042385691 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
3 Hb_003943_060 0.0050253316 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
4 Hb_000417_330 0.0062652453 - - -
5 Hb_012438_020 0.0063545896 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_001383_040 0.0067624295 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
7 Hb_127835_030 0.0246946161 - - -
8 Hb_160879_010 0.0337009006 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
9 Hb_004553_010 0.0374676462 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
10 Hb_185467_040 0.0375723098 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_003766_020 0.0434012662 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
12 Hb_004400_050 0.0443397814 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
13 Hb_010435_010 0.0508562739 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_001318_060 0.0594855221 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
15 Hb_000493_110 0.0689998108 - - hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
16 Hb_031964_010 0.0725387756 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
17 Hb_111985_030 0.076091407 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_004566_050 0.0765060174 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003410_020 0.0975803 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_034909_010 0.0976966738 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_008576_010 Hb_008576_010 Hb_149253_010 Hb_149253_010 Hb_008576_010--Hb_149253_010 Hb_003943_060 Hb_003943_060 Hb_008576_010--Hb_003943_060 Hb_000417_330 Hb_000417_330 Hb_008576_010--Hb_000417_330 Hb_012438_020 Hb_012438_020 Hb_008576_010--Hb_012438_020 Hb_001383_040 Hb_001383_040 Hb_008576_010--Hb_001383_040 Hb_127835_030 Hb_127835_030 Hb_008576_010--Hb_127835_030 Hb_149253_010--Hb_003943_060 Hb_149253_010--Hb_012438_020 Hb_149253_010--Hb_001383_040 Hb_149253_010--Hb_000417_330 Hb_149253_010--Hb_127835_030 Hb_003943_060--Hb_012438_020 Hb_003943_060--Hb_001383_040 Hb_003943_060--Hb_000417_330 Hb_003943_060--Hb_127835_030 Hb_000417_330--Hb_012438_020 Hb_000417_330--Hb_001383_040 Hb_000417_330--Hb_127835_030 Hb_012438_020--Hb_001383_040 Hb_012438_020--Hb_127835_030 Hb_001383_040--Hb_127835_030 Hb_160879_010 Hb_160879_010 Hb_127835_030--Hb_160879_010 Hb_004553_010 Hb_004553_010 Hb_127835_030--Hb_004553_010 Hb_185467_040 Hb_185467_040 Hb_127835_030--Hb_185467_040 Hb_003766_020 Hb_003766_020 Hb_127835_030--Hb_003766_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0189971 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0353323

CAGE analysis