Hb_002092_140

Information

Type -
Description -
Location Contig2092: 169260-169855
Sequence    

Annotation

kegg
ID egr:104421566
description cell number regulator 10-like
nr
ID KCW83840.1
description hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
swissprot
ID Q9LQU2
description Protein PLANT CADMIUM RESISTANCE 1 OS=Arabidopsis thaliana GN=PCR1 PE=1 SV=1
trembl
ID A0A059D0U9
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B00708 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002092_140 0.0 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
2 Hb_166828_010 0.0164318488 - - -
3 Hb_080873_010 0.0892908667 - - -
4 Hb_000320_170 0.0916851602 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002836_030 0.1072025305 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
6 Hb_003582_050 0.1109727983 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
7 Hb_000002_280 0.1163063087 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
8 Hb_144813_010 0.1241033195 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
9 Hb_000300_240 0.133344825 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
10 Hb_000892_040 0.1450809786 - - -
11 Hb_011888_010 0.156548046 - - Receptor like protein 46, putative [Theobroma cacao]
12 Hb_071998_010 0.1604834078 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
13 Hb_010091_040 0.1790839735 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
14 Hb_002284_040 0.1862107495 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_034909_010 0.1883644909 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_003410_020 0.1884798155 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_011344_150 0.2086449379 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_052764_010 0.209091277 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
19 Hb_002221_020 0.2091687998 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
20 Hb_002571_050 0.209253324 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002092_140 Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_002092_140--Hb_166828_010 Hb_080873_010 Hb_080873_010 Hb_002092_140--Hb_080873_010 Hb_000320_170 Hb_000320_170 Hb_002092_140--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_002092_140--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_002092_140--Hb_003582_050 Hb_000002_280 Hb_000002_280 Hb_002092_140--Hb_000002_280 Hb_166828_010--Hb_000320_170 Hb_166828_010--Hb_002836_030 Hb_166828_010--Hb_003582_050 Hb_166828_010--Hb_080873_010 Hb_144813_010 Hb_144813_010 Hb_166828_010--Hb_144813_010 Hb_000892_040 Hb_000892_040 Hb_080873_010--Hb_000892_040 Hb_080873_010--Hb_000002_280 Hb_002284_040 Hb_002284_040 Hb_080873_010--Hb_002284_040 Hb_000501_180 Hb_000501_180 Hb_080873_010--Hb_000501_180 Hb_000320_170--Hb_002836_030 Hb_000320_170--Hb_003582_050 Hb_000320_170--Hb_144813_010 Hb_011888_010 Hb_011888_010 Hb_000320_170--Hb_011888_010 Hb_071998_010 Hb_071998_010 Hb_000320_170--Hb_071998_010 Hb_002836_030--Hb_003582_050 Hb_002836_030--Hb_144813_010 Hb_002836_030--Hb_011888_010 Hb_002836_030--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_002836_030--Hb_034909_010 Hb_003582_050--Hb_144813_010 Hb_003582_050--Hb_011888_010 Hb_003582_050--Hb_071998_010 Hb_003582_050--Hb_034909_010 Hb_000300_240 Hb_000300_240 Hb_000002_280--Hb_000300_240 Hb_000002_280--Hb_166828_010 Hb_002571_050 Hb_002571_050 Hb_000002_280--Hb_002571_050 Hb_010091_040 Hb_010091_040 Hb_000002_280--Hb_010091_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.25357 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.0556

CAGE analysis