Hb_000892_040

Information

Type -
Description -
Location Contig892: 51516-51737
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016702
description linoleate 13s-lipoxygenase 2- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000892_040 0.0 - - -
2 Hb_080873_010 0.0562361609 - - -
3 Hb_000501_180 0.1302724487 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
4 Hb_002284_040 0.1433290651 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_002092_140 0.1450809786 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
6 Hb_007590_040 0.1545764783 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
7 Hb_166828_010 0.1613104918 - - -
8 Hb_006717_020 0.1670288864 - - calcium-dependent protein kinase [Hevea brasiliensis]
9 Hb_001821_070 0.1715264655 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
10 Hb_000522_020 0.1718261847 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
11 Hb_002221_020 0.1727696772 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
12 Hb_000002_280 0.1791075981 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
13 Hb_000846_020 0.1980330484 - - cytochrome P450, putative [Ricinus communis]
14 Hb_015473_020 0.1996833013 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
15 Hb_010091_040 0.2111785294 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_000300_240 0.2237931334 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
17 Hb_002571_050 0.2267620357 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
18 Hb_028487_080 0.2284515089 - - Pectinesterase-1 precursor, putative [Ricinus communis]
19 Hb_030873_010 0.2327609809 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
20 Hb_002218_060 0.2343575663 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000892_040 Hb_000892_040 Hb_080873_010 Hb_080873_010 Hb_000892_040--Hb_080873_010 Hb_000501_180 Hb_000501_180 Hb_000892_040--Hb_000501_180 Hb_002284_040 Hb_002284_040 Hb_000892_040--Hb_002284_040 Hb_002092_140 Hb_002092_140 Hb_000892_040--Hb_002092_140 Hb_007590_040 Hb_007590_040 Hb_000892_040--Hb_007590_040 Hb_166828_010 Hb_166828_010 Hb_000892_040--Hb_166828_010 Hb_080873_010--Hb_002092_140 Hb_080873_010--Hb_166828_010 Hb_000002_280 Hb_000002_280 Hb_080873_010--Hb_000002_280 Hb_080873_010--Hb_002284_040 Hb_080873_010--Hb_000501_180 Hb_000522_020 Hb_000522_020 Hb_000501_180--Hb_000522_020 Hb_000501_180--Hb_007590_040 Hb_015473_020 Hb_015473_020 Hb_000501_180--Hb_015473_020 Hb_001821_070 Hb_001821_070 Hb_000501_180--Hb_001821_070 Hb_002221_020 Hb_002221_020 Hb_000501_180--Hb_002221_020 Hb_010091_040 Hb_010091_040 Hb_002284_040--Hb_010091_040 Hb_007858_030 Hb_007858_030 Hb_002284_040--Hb_007858_030 Hb_052764_010 Hb_052764_010 Hb_002284_040--Hb_052764_010 Hb_000205_220 Hb_000205_220 Hb_002284_040--Hb_000205_220 Hb_002092_140--Hb_166828_010 Hb_000320_170 Hb_000320_170 Hb_002092_140--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_002092_140--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_002092_140--Hb_003582_050 Hb_002092_140--Hb_000002_280 Hb_007590_040--Hb_000522_020 Hb_007590_040--Hb_002221_020 Hb_001850_010 Hb_001850_010 Hb_007590_040--Hb_001850_010 Hb_000915_220 Hb_000915_220 Hb_007590_040--Hb_000915_220 Hb_007590_040--Hb_015473_020 Hb_166828_010--Hb_000320_170 Hb_166828_010--Hb_002836_030 Hb_166828_010--Hb_003582_050 Hb_144813_010 Hb_144813_010 Hb_166828_010--Hb_144813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.4543 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.930168

CAGE analysis