Hb_002221_020

Information

Type -
Description -
Location Contig2221: 22597-22794
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28160g
description POPTRDRAFT_562008; hypothetical protein
nr
ID KJB48729.1
description hypothetical protein B456_008G083700 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2SX60
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G083700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22996: 22570-22882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002221_020 0.0 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
2 Hb_007590_040 0.1189389219 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
3 Hb_002571_050 0.1202284386 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
4 Hb_000915_220 0.1292436701 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
5 Hb_000501_180 0.138973417 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
6 Hb_005081_090 0.1431292404 - - -
7 Hb_000522_020 0.1529038503 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
8 Hb_001850_010 0.1639681066 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
9 Hb_000892_040 0.1727696772 - - -
10 Hb_080873_010 0.1742852869 - - -
11 Hb_000002_280 0.1783643233 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
12 Hb_000300_240 0.181243026 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
13 Hb_006052_050 0.1821645489 - - hypothetical protein EUGRSUZ_A00568 [Eucalyptus grandis]
14 Hb_001899_040 0.1917059871 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
15 Hb_030873_010 0.1937209015 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
16 Hb_167020_010 0.2001484315 - - unnamed protein product [Vitis vinifera]
17 Hb_002092_140 0.2091687998 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
18 Hb_002218_060 0.2095214693 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000286_180 0.2157373024 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
20 Hb_000119_050 0.2163675085 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]

Gene co-expression network

sample Hb_002221_020 Hb_002221_020 Hb_007590_040 Hb_007590_040 Hb_002221_020--Hb_007590_040 Hb_002571_050 Hb_002571_050 Hb_002221_020--Hb_002571_050 Hb_000915_220 Hb_000915_220 Hb_002221_020--Hb_000915_220 Hb_000501_180 Hb_000501_180 Hb_002221_020--Hb_000501_180 Hb_005081_090 Hb_005081_090 Hb_002221_020--Hb_005081_090 Hb_000522_020 Hb_000522_020 Hb_002221_020--Hb_000522_020 Hb_007590_040--Hb_000522_020 Hb_007590_040--Hb_000501_180 Hb_001850_010 Hb_001850_010 Hb_007590_040--Hb_001850_010 Hb_007590_040--Hb_000915_220 Hb_015473_020 Hb_015473_020 Hb_007590_040--Hb_015473_020 Hb_001899_040 Hb_001899_040 Hb_002571_050--Hb_001899_040 Hb_000002_280 Hb_000002_280 Hb_002571_050--Hb_000002_280 Hb_002571_050--Hb_005081_090 Hb_002571_050--Hb_000915_220 Hb_000300_240 Hb_000300_240 Hb_002571_050--Hb_000300_240 Hb_067034_010 Hb_067034_010 Hb_000915_220--Hb_067034_010 Hb_000915_220--Hb_001850_010 Hb_006052_050 Hb_006052_050 Hb_000915_220--Hb_006052_050 Hb_000501_180--Hb_000522_020 Hb_000501_180--Hb_015473_020 Hb_000892_040 Hb_000892_040 Hb_000501_180--Hb_000892_040 Hb_001821_070 Hb_001821_070 Hb_000501_180--Hb_001821_070 Hb_038190_030 Hb_038190_030 Hb_005081_090--Hb_038190_030 Hb_167020_010 Hb_167020_010 Hb_005081_090--Hb_167020_010 Hb_005081_090--Hb_001899_040 Hb_007709_020 Hb_007709_020 Hb_005081_090--Hb_007709_020 Hb_000522_020--Hb_015473_020 Hb_000522_020--Hb_001850_010 Hb_030873_010 Hb_030873_010 Hb_000522_020--Hb_030873_010 Hb_000119_050 Hb_000119_050 Hb_000522_020--Hb_000119_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 22.7546 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.71975 5.47645

CAGE analysis