Hb_005081_090

Information

Type -
Description -
Location Contig5081: 61459-61844
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005081_090 0.0 - - -
2 Hb_038190_030 0.1121805118 - - -
3 Hb_167020_010 0.1175550329 - - unnamed protein product [Vitis vinifera]
4 Hb_002221_020 0.1431292404 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
5 Hb_002571_050 0.1431775601 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
6 Hb_001899_040 0.1663243032 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
7 Hb_007709_020 0.16713028 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
8 Hb_151694_010 0.1812579856 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
9 Hb_001477_120 0.1861725131 - - hypothetical protein JCGZ_25721 [Jatropha curcas]
10 Hb_000915_220 0.1883861231 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
11 Hb_003938_100 0.1949810957 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003727_060 0.1957241637 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_028872_040 0.2040834674 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_004021_120 0.2067142768 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_000300_240 0.2089146172 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
16 Hb_002056_140 0.2147101457 - - -
17 Hb_006052_050 0.2188645212 - - hypothetical protein EUGRSUZ_A00568 [Eucalyptus grandis]
18 Hb_002142_010 0.2203879026 - - conserved hypothetical protein [Ricinus communis]
19 Hb_138667_010 0.2242199961 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
20 Hb_004063_010 0.2285804205 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_005081_090 Hb_005081_090 Hb_038190_030 Hb_038190_030 Hb_005081_090--Hb_038190_030 Hb_167020_010 Hb_167020_010 Hb_005081_090--Hb_167020_010 Hb_002221_020 Hb_002221_020 Hb_005081_090--Hb_002221_020 Hb_002571_050 Hb_002571_050 Hb_005081_090--Hb_002571_050 Hb_001899_040 Hb_001899_040 Hb_005081_090--Hb_001899_040 Hb_007709_020 Hb_007709_020 Hb_005081_090--Hb_007709_020 Hb_003938_100 Hb_003938_100 Hb_038190_030--Hb_003938_100 Hb_002056_140 Hb_002056_140 Hb_038190_030--Hb_002056_140 Hb_038190_030--Hb_007709_020 Hb_003727_060 Hb_003727_060 Hb_038190_030--Hb_003727_060 Hb_138667_010 Hb_138667_010 Hb_038190_030--Hb_138667_010 Hb_004021_120 Hb_004021_120 Hb_167020_010--Hb_004021_120 Hb_000915_220 Hb_000915_220 Hb_167020_010--Hb_000915_220 Hb_001477_120 Hb_001477_120 Hb_167020_010--Hb_001477_120 Hb_167020_010--Hb_002571_050 Hb_129399_010 Hb_129399_010 Hb_167020_010--Hb_129399_010 Hb_007590_040 Hb_007590_040 Hb_002221_020--Hb_007590_040 Hb_002221_020--Hb_002571_050 Hb_002221_020--Hb_000915_220 Hb_000501_180 Hb_000501_180 Hb_002221_020--Hb_000501_180 Hb_000522_020 Hb_000522_020 Hb_002221_020--Hb_000522_020 Hb_002571_050--Hb_001899_040 Hb_000002_280 Hb_000002_280 Hb_002571_050--Hb_000002_280 Hb_002571_050--Hb_000915_220 Hb_000300_240 Hb_000300_240 Hb_002571_050--Hb_000300_240 Hb_027337_050 Hb_027337_050 Hb_001899_040--Hb_027337_050 Hb_009898_060 Hb_009898_060 Hb_001899_040--Hb_009898_060 Hb_001899_040--Hb_000300_240 Hb_001899_040--Hb_038190_030 Hb_001899_040--Hb_000002_280 Hb_028872_040 Hb_028872_040 Hb_007709_020--Hb_028872_040 Hb_002142_010 Hb_002142_010 Hb_007709_020--Hb_002142_010 Hb_151694_010 Hb_151694_010 Hb_007709_020--Hb_151694_010 Hb_007709_020--Hb_138667_010 Hb_000280_120 Hb_000280_120 Hb_007709_020--Hb_000280_120 Hb_007709_020--Hb_003938_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.23525 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.281149 0.464353

CAGE analysis