Hb_007590_040

Information

Type -
Description -
Location Contig7590: 19543-29455
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25830g
description POPTRDRAFT_172311; hypothetical protein
nr
ID XP_012067616.1
description PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
swissprot
ID Q93Z81
description Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1
trembl
ID U5GRE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s25830g PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar cation proton exchanger 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57167: 27189-29209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007590_040 0.0 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
2 Hb_000522_020 0.069743188 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
3 Hb_000501_180 0.0916152769 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
4 Hb_002221_020 0.1189389219 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
5 Hb_001850_010 0.1369612328 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
6 Hb_000915_220 0.137346756 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
7 Hb_015473_020 0.1474552439 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
8 Hb_030873_010 0.1515737858 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
9 Hb_000892_040 0.1545764783 - - -
10 Hb_006052_050 0.1563805965 - - hypothetical protein EUGRSUZ_A00568 [Eucalyptus grandis]
11 Hb_000119_050 0.1675711141 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
12 Hb_080873_010 0.1800159792 - - -
13 Hb_001821_070 0.1812781057 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
14 Hb_002571_050 0.1831209978 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
15 Hb_000164_180 0.184832561 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
16 Hb_028487_080 0.188037514 - - Pectinesterase-1 precursor, putative [Ricinus communis]
17 Hb_002218_060 0.1887357958 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002284_040 0.193111648 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
19 Hb_000846_020 0.1961525694 - - cytochrome P450, putative [Ricinus communis]
20 Hb_004940_090 0.1970734686 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_007590_040 Hb_007590_040 Hb_000522_020 Hb_000522_020 Hb_007590_040--Hb_000522_020 Hb_000501_180 Hb_000501_180 Hb_007590_040--Hb_000501_180 Hb_002221_020 Hb_002221_020 Hb_007590_040--Hb_002221_020 Hb_001850_010 Hb_001850_010 Hb_007590_040--Hb_001850_010 Hb_000915_220 Hb_000915_220 Hb_007590_040--Hb_000915_220 Hb_015473_020 Hb_015473_020 Hb_007590_040--Hb_015473_020 Hb_000522_020--Hb_000501_180 Hb_000522_020--Hb_015473_020 Hb_000522_020--Hb_001850_010 Hb_030873_010 Hb_030873_010 Hb_000522_020--Hb_030873_010 Hb_000119_050 Hb_000119_050 Hb_000522_020--Hb_000119_050 Hb_000501_180--Hb_015473_020 Hb_000892_040 Hb_000892_040 Hb_000501_180--Hb_000892_040 Hb_001821_070 Hb_001821_070 Hb_000501_180--Hb_001821_070 Hb_000501_180--Hb_002221_020 Hb_002571_050 Hb_002571_050 Hb_002221_020--Hb_002571_050 Hb_002221_020--Hb_000915_220 Hb_005081_090 Hb_005081_090 Hb_002221_020--Hb_005081_090 Hb_002221_020--Hb_000522_020 Hb_004940_090 Hb_004940_090 Hb_001850_010--Hb_004940_090 Hb_001850_010--Hb_000119_050 Hb_039650_010 Hb_039650_010 Hb_001850_010--Hb_039650_010 Hb_001850_010--Hb_030873_010 Hb_001850_010--Hb_015473_020 Hb_067034_010 Hb_067034_010 Hb_000915_220--Hb_067034_010 Hb_000915_220--Hb_002571_050 Hb_000915_220--Hb_001850_010 Hb_006052_050 Hb_006052_050 Hb_000915_220--Hb_006052_050 Hb_028487_080 Hb_028487_080 Hb_015473_020--Hb_028487_080 Hb_015473_020--Hb_001821_070 Hb_005529_050 Hb_005529_050 Hb_015473_020--Hb_005529_050 Hb_000846_020 Hb_000846_020 Hb_015473_020--Hb_000846_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0193175 10.9311 0.0453109 0.0370387 0.0380577 0.016903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.39839 1.64352

CAGE analysis