Hb_015473_020

Information

Type -
Description -
Location Contig15473: 55906-57321
Sequence    

Annotation

kegg
ID mdm:103428343
description receptor-like protein kinase FERONIA
nr
ID KJB08577.1
description hypothetical protein B456_001G090400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M0RU06
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0000166
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015473_020 0.0 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
2 Hb_028487_080 0.0636517256 - - Pectinesterase-1 precursor, putative [Ricinus communis]
3 Hb_001821_070 0.0862981672 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
4 Hb_005529_050 0.1049597771 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]
5 Hb_000522_020 0.1066208218 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
6 Hb_000846_020 0.1067786153 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000501_180 0.1089473691 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
8 Hb_000876_060 0.1152985508 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001850_010 0.1330002791 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
10 Hb_000164_180 0.1334789848 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
11 Hb_002864_040 0.1337292906 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
12 Hb_007590_040 0.1474552439 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
13 Hb_004096_040 0.1485506148 - - cytochrome P450, putative [Ricinus communis]
14 Hb_030873_010 0.1567059543 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
15 Hb_001031_020 0.1574089192 - - hypothetical protein VITISV_000631 [Vitis vinifera]
16 Hb_039650_010 0.1583255605 - - cellulose synthase-like protein [Populus tomentosa]
17 Hb_027556_080 0.1602347998 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
18 Hb_054886_010 0.1623123078 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001796_010 0.1625551144 - - purine transporter, putative [Ricinus communis]
20 Hb_000635_170 0.1641720286 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_015473_020 Hb_015473_020 Hb_028487_080 Hb_028487_080 Hb_015473_020--Hb_028487_080 Hb_001821_070 Hb_001821_070 Hb_015473_020--Hb_001821_070 Hb_005529_050 Hb_005529_050 Hb_015473_020--Hb_005529_050 Hb_000522_020 Hb_000522_020 Hb_015473_020--Hb_000522_020 Hb_000846_020 Hb_000846_020 Hb_015473_020--Hb_000846_020 Hb_000501_180 Hb_000501_180 Hb_015473_020--Hb_000501_180 Hb_028487_080--Hb_005529_050 Hb_028487_080--Hb_001821_070 Hb_001031_020 Hb_001031_020 Hb_028487_080--Hb_001031_020 Hb_028487_080--Hb_000846_020 Hb_000635_170 Hb_000635_170 Hb_028487_080--Hb_000635_170 Hb_001821_070--Hb_000846_020 Hb_001821_070--Hb_005529_050 Hb_000876_060 Hb_000876_060 Hb_001821_070--Hb_000876_060 Hb_001821_070--Hb_000501_180 Hb_027556_080 Hb_027556_080 Hb_005529_050--Hb_027556_080 Hb_004096_040 Hb_004096_040 Hb_005529_050--Hb_004096_040 Hb_005529_050--Hb_000876_060 Hb_005529_050--Hb_000846_020 Hb_007590_040 Hb_007590_040 Hb_000522_020--Hb_007590_040 Hb_000522_020--Hb_000501_180 Hb_001850_010 Hb_001850_010 Hb_000522_020--Hb_001850_010 Hb_030873_010 Hb_030873_010 Hb_000522_020--Hb_030873_010 Hb_000119_050 Hb_000119_050 Hb_000522_020--Hb_000119_050 Hb_000846_020--Hb_000876_060 Hb_000846_020--Hb_004096_040 Hb_000501_180--Hb_007590_040 Hb_000892_040 Hb_000892_040 Hb_000501_180--Hb_000892_040 Hb_002221_020 Hb_002221_020 Hb_000501_180--Hb_002221_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.04997 0 0.0232947 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0323597 0.112531

CAGE analysis