Hb_000522_020

Information

Type -
Description -
Location Contig522: 8076-13220
Sequence    

Annotation

kegg
ID rcu:RCOM_0522350
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_012071021.1
description PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
swissprot
ID Q8LBL1
description Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2
trembl
ID A0A067KSV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01038 PE=4 SV=1
Gene Ontology
ID GO:0016020
description two-pore potassium channel 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_020 0.0 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
2 Hb_007590_040 0.069743188 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
3 Hb_000501_180 0.0902638145 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
4 Hb_015473_020 0.1066208218 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
5 Hb_001850_010 0.1132814257 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
6 Hb_030873_010 0.1408594251 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
7 Hb_000119_050 0.1411221934 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
8 Hb_028487_080 0.1444624735 - - Pectinesterase-1 precursor, putative [Ricinus communis]
9 Hb_001821_070 0.1503352181 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
10 Hb_002221_020 0.1529038503 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
11 Hb_000915_220 0.1550939917 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
12 Hb_002864_040 0.166972359 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
13 Hb_000846_020 0.1672604787 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000164_180 0.168276165 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
15 Hb_039650_010 0.1686085077 - - cellulose synthase-like protein [Populus tomentosa]
16 Hb_000892_040 0.1718261847 - - -
17 Hb_004940_090 0.1750619813 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_005000_230 0.1771286387 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
19 Hb_067034_010 0.1799064642 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
20 Hb_000876_060 0.1807556241 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000522_020 Hb_000522_020 Hb_007590_040 Hb_007590_040 Hb_000522_020--Hb_007590_040 Hb_000501_180 Hb_000501_180 Hb_000522_020--Hb_000501_180 Hb_015473_020 Hb_015473_020 Hb_000522_020--Hb_015473_020 Hb_001850_010 Hb_001850_010 Hb_000522_020--Hb_001850_010 Hb_030873_010 Hb_030873_010 Hb_000522_020--Hb_030873_010 Hb_000119_050 Hb_000119_050 Hb_000522_020--Hb_000119_050 Hb_007590_040--Hb_000501_180 Hb_002221_020 Hb_002221_020 Hb_007590_040--Hb_002221_020 Hb_007590_040--Hb_001850_010 Hb_000915_220 Hb_000915_220 Hb_007590_040--Hb_000915_220 Hb_007590_040--Hb_015473_020 Hb_000501_180--Hb_015473_020 Hb_000892_040 Hb_000892_040 Hb_000501_180--Hb_000892_040 Hb_001821_070 Hb_001821_070 Hb_000501_180--Hb_001821_070 Hb_000501_180--Hb_002221_020 Hb_028487_080 Hb_028487_080 Hb_015473_020--Hb_028487_080 Hb_015473_020--Hb_001821_070 Hb_005529_050 Hb_005529_050 Hb_015473_020--Hb_005529_050 Hb_000846_020 Hb_000846_020 Hb_015473_020--Hb_000846_020 Hb_004940_090 Hb_004940_090 Hb_001850_010--Hb_004940_090 Hb_001850_010--Hb_000119_050 Hb_039650_010 Hb_039650_010 Hb_001850_010--Hb_039650_010 Hb_001850_010--Hb_030873_010 Hb_001850_010--Hb_015473_020 Hb_030873_010--Hb_000119_050 Hb_030873_010--Hb_007590_040 Hb_030873_010--Hb_015473_020 Hb_030873_010--Hb_028487_080 Hb_001274_040 Hb_001274_040 Hb_000119_050--Hb_001274_040 Hb_000767_040 Hb_000767_040 Hb_000119_050--Hb_000767_040 Hb_000111_130 Hb_000111_130 Hb_000119_050--Hb_000111_130 Hb_005081_060 Hb_005081_060 Hb_000119_050--Hb_005081_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.39945 0.027416 0.0721677 0.0237727 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0212441 0 0.270916 0.937934

CAGE analysis