Hb_028487_080

Information

Type -
Description -
Location Contig28487: 88410-90823
Sequence    

Annotation

kegg
ID rcu:RCOM_0628790
description Pectinesterase-1 precursor, putative (EC:3.1.1.11)
nr
ID XP_002527782.1
description Pectinesterase-1 precursor, putative [Ricinus communis]
swissprot
ID O49298
description Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1
trembl
ID B9SP63
description Pectinesterase OS=Ricinus communis GN=RCOM_0628790 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectin methylesterase 6 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29799: 88566-88832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_080 0.0 - - Pectinesterase-1 precursor, putative [Ricinus communis]
2 Hb_015473_020 0.0636517256 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
3 Hb_005529_050 0.0860430695 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]
4 Hb_001821_070 0.0921564545 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
5 Hb_001031_020 0.1159477127 - - hypothetical protein VITISV_000631 [Vitis vinifera]
6 Hb_000846_020 0.1183395125 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000635_170 0.1194589964 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000876_060 0.1203091131 - - conserved hypothetical protein [Ricinus communis]
9 Hb_027556_080 0.1283166102 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
10 Hb_001985_010 0.1325127159 - - conserved hypothetical protein [Ricinus communis]
11 Hb_054886_010 0.1327728342 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004096_040 0.1347719581 - - cytochrome P450, putative [Ricinus communis]
13 Hb_002864_040 0.1397891095 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
14 Hb_000522_020 0.1444624735 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
15 Hb_000336_170 0.1462218961 - - Polcalcin Jun o, putative [Ricinus communis]
16 Hb_000563_380 0.1475431419 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]
17 Hb_163950_060 0.1478297328 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_004059_010 0.1514700351 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
19 Hb_001796_010 0.1517043592 - - purine transporter, putative [Ricinus communis]
20 Hb_000215_120 0.1520599548 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_028487_080 Hb_028487_080 Hb_015473_020 Hb_015473_020 Hb_028487_080--Hb_015473_020 Hb_005529_050 Hb_005529_050 Hb_028487_080--Hb_005529_050 Hb_001821_070 Hb_001821_070 Hb_028487_080--Hb_001821_070 Hb_001031_020 Hb_001031_020 Hb_028487_080--Hb_001031_020 Hb_000846_020 Hb_000846_020 Hb_028487_080--Hb_000846_020 Hb_000635_170 Hb_000635_170 Hb_028487_080--Hb_000635_170 Hb_015473_020--Hb_001821_070 Hb_015473_020--Hb_005529_050 Hb_000522_020 Hb_000522_020 Hb_015473_020--Hb_000522_020 Hb_015473_020--Hb_000846_020 Hb_000501_180 Hb_000501_180 Hb_015473_020--Hb_000501_180 Hb_027556_080 Hb_027556_080 Hb_005529_050--Hb_027556_080 Hb_004096_040 Hb_004096_040 Hb_005529_050--Hb_004096_040 Hb_000876_060 Hb_000876_060 Hb_005529_050--Hb_000876_060 Hb_005529_050--Hb_000846_020 Hb_001821_070--Hb_000846_020 Hb_001821_070--Hb_005529_050 Hb_001821_070--Hb_000876_060 Hb_001821_070--Hb_000501_180 Hb_000563_380 Hb_000563_380 Hb_001031_020--Hb_000563_380 Hb_008931_020 Hb_008931_020 Hb_001031_020--Hb_008931_020 Hb_001031_020--Hb_000635_170 Hb_004108_200 Hb_004108_200 Hb_001031_020--Hb_004108_200 Hb_004162_030 Hb_004162_030 Hb_001031_020--Hb_004162_030 Hb_000846_020--Hb_000876_060 Hb_000846_020--Hb_004096_040 Hb_000635_170--Hb_008931_020 Hb_013057_010 Hb_013057_010 Hb_000635_170--Hb_013057_010 Hb_000336_170 Hb_000336_170 Hb_000635_170--Hb_000336_170 Hb_000635_170--Hb_000563_380 Hb_000045_110 Hb_000045_110 Hb_000635_170--Hb_000045_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.8874 0.00826378 0.364972 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.111012 0.545251

CAGE analysis