Hb_000876_060

Information

Type -
Description -
Location Contig876: 46466-48139
Sequence    

Annotation

kegg
ID rcu:RCOM_1353710
description hypothetical protein
nr
ID XP_002519465.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9S0E6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353710 PE=4 SV=1
Gene Ontology
ID GO:0016021
description major facilitator superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000876_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000846_020 0.07450703 - - cytochrome P450, putative [Ricinus communis]
3 Hb_004096_040 0.088872054 - - cytochrome P450, putative [Ricinus communis]
4 Hb_002864_040 0.0985352431 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
5 Hb_005529_050 0.0997538406 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]
6 Hb_015473_020 0.1152985508 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
7 Hb_001821_070 0.1180490914 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
8 Hb_028487_080 0.1203091131 - - Pectinesterase-1 precursor, putative [Ricinus communis]
9 Hb_015784_010 0.1260690639 - - hypothetical protein VITISV_019364 [Vitis vinifera]
10 Hb_000395_160 0.1269205506 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
11 Hb_005687_020 0.1269460517 - - P66 protein [Hevea brasiliensis]
12 Hb_000979_270 0.1301444417 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
13 Hb_186671_020 0.1316832384 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_001796_010 0.1323100021 - - purine transporter, putative [Ricinus communis]
15 Hb_027556_080 0.135269988 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
16 Hb_005050_010 0.1368068103 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
17 Hb_018609_010 0.1396808182 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000215_120 0.1412863253 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
19 Hb_000635_170 0.1415198354 - - cytochrome P450, putative [Ricinus communis]
20 Hb_163950_060 0.1415438071 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_000876_060 Hb_000876_060 Hb_000846_020 Hb_000846_020 Hb_000876_060--Hb_000846_020 Hb_004096_040 Hb_004096_040 Hb_000876_060--Hb_004096_040 Hb_002864_040 Hb_002864_040 Hb_000876_060--Hb_002864_040 Hb_005529_050 Hb_005529_050 Hb_000876_060--Hb_005529_050 Hb_015473_020 Hb_015473_020 Hb_000876_060--Hb_015473_020 Hb_001821_070 Hb_001821_070 Hb_000876_060--Hb_001821_070 Hb_000846_020--Hb_001821_070 Hb_000846_020--Hb_015473_020 Hb_000846_020--Hb_005529_050 Hb_000846_020--Hb_004096_040 Hb_028487_080 Hb_028487_080 Hb_000846_020--Hb_028487_080 Hb_000395_160 Hb_000395_160 Hb_004096_040--Hb_000395_160 Hb_186671_020 Hb_186671_020 Hb_004096_040--Hb_186671_020 Hb_163950_060 Hb_163950_060 Hb_004096_040--Hb_163950_060 Hb_005687_020 Hb_005687_020 Hb_004096_040--Hb_005687_020 Hb_000979_270 Hb_000979_270 Hb_004096_040--Hb_000979_270 Hb_007850_050 Hb_007850_050 Hb_002864_040--Hb_007850_050 Hb_002864_040--Hb_004096_040 Hb_002864_040--Hb_015473_020 Hb_000215_120 Hb_000215_120 Hb_002864_040--Hb_000215_120 Hb_002864_040--Hb_000846_020 Hb_027556_080 Hb_027556_080 Hb_005529_050--Hb_027556_080 Hb_005529_050--Hb_028487_080 Hb_005529_050--Hb_004096_040 Hb_005529_050--Hb_015473_020 Hb_015473_020--Hb_028487_080 Hb_015473_020--Hb_001821_070 Hb_000522_020 Hb_000522_020 Hb_015473_020--Hb_000522_020 Hb_000501_180 Hb_000501_180 Hb_015473_020--Hb_000501_180 Hb_001821_070--Hb_028487_080 Hb_001821_070--Hb_005529_050 Hb_001821_070--Hb_000501_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.07598 0 0.009489 0.0226704 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00863982 0.0455412

CAGE analysis