Hb_000979_270

Information

Type -
Description -
Location Contig979: 295253-296011
Sequence    

Annotation

kegg
ID rcu:RCOM_2143600
description Major latex protein, putative
nr
ID XP_012072243.1
description PREDICTED: MLP-like protein 31 [Jatropha curcas]
swissprot
ID Q941R6
description MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=2 SV=2
trembl
ID B9TAZ3
description Major latex protein, putative OS=Ricinus communis GN=RCOM_2143600 PE=4 SV=1
Gene Ontology
ID GO:0006952
description mlp-like protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_270 0.0 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
2 Hb_005050_010 0.0287315442 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
3 Hb_000004_150 0.0392920744 - - hypothetical protein RCOM_1382630 [Ricinus communis]
4 Hb_000007_170 0.0392920744 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
5 Hb_000010_280 0.0392920744 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
6 Hb_000022_220 0.0392920744 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
7 Hb_000045_120 0.0392920744 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
8 Hb_000056_320 0.0392920744 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_000066_110 0.0392920744 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01370 [Jatropha curcas]
10 Hb_000072_270 0.0392920744 - - JHL22C18.10 [Jatropha curcas]
11 Hb_000078_110 0.0392920744 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
12 Hb_000081_190 0.0392920744 - - -
13 Hb_000082_030 0.0392920744 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105164525 [Sesamum indicum]
14 Hb_000085_430 0.0392920744 - - -
15 Hb_000092_110 0.0392920744 - - catalytic, putative [Ricinus communis]
16 Hb_000093_120 0.0392920744 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000120_110 0.0392920744 - - 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative [Ricinus communis]
18 Hb_000125_160 0.0392920744 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000127_060 0.0392920744 - - -
20 Hb_000128_020 0.0392920744 - - -

Gene co-expression network

sample Hb_000979_270 Hb_000979_270 Hb_005050_010 Hb_005050_010 Hb_000979_270--Hb_005050_010 Hb_000004_150 Hb_000004_150 Hb_000979_270--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_000979_270--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_000979_270--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_000979_270--Hb_000022_220 Hb_000045_120 Hb_000045_120 Hb_000979_270--Hb_000045_120 Hb_099085_010 Hb_099085_010 Hb_005050_010--Hb_099085_010 Hb_005050_010--Hb_000004_150 Hb_005050_010--Hb_000007_170 Hb_005050_010--Hb_000010_280 Hb_005050_010--Hb_000022_220 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000056_320 Hb_000056_320 Hb_000004_150--Hb_000056_320 Hb_000066_110 Hb_000066_110 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.693952 2267.28 0.312859 0.348657 0.32074 0.464751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.1594 0.714243

CAGE analysis