Hb_005687_020

Information

Type -
Description -
Location Contig5687: 30542-33528
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06090g
description hypothetical protein
nr
ID AAO49267.1
description P66 protein [Hevea brasiliensis]
swissprot
ID Q7XKV5
description Beta-glucosidase 11 OS=Oryza sativa subsp. japonica GN=BGLU11 PE=3 SV=2
trembl
ID Q84L69
description P66 protein OS=Hevea brasiliensis GN=P66 PE=2 SV=1
Gene Ontology
ID GO:0008422
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49212: 30722-31659 , PASA_asmbl_49213: 31660-31868 , PASA_asmbl_49214: 31991-33491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005687_020 0.0 - - P66 protein [Hevea brasiliensis]
2 Hb_000395_160 0.0615112256 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
3 Hb_163950_060 0.0740292815 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_011980_020 0.0746229423 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_004096_040 0.0802079684 - - cytochrome P450, putative [Ricinus communis]
6 Hb_186671_020 0.0830190735 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_001796_010 0.0947545851 - - purine transporter, putative [Ricinus communis]
8 Hb_003973_050 0.0990344022 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
9 Hb_000979_270 0.0996274773 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
10 Hb_007943_040 0.1012860719 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
11 Hb_008978_010 0.1033049958 - - transmembrane receptor, putative [Ricinus communis]
12 Hb_000004_150 0.1034768476 - - hypothetical protein RCOM_1382630 [Ricinus communis]
13 Hb_000007_170 0.1034768476 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
14 Hb_000010_280 0.1034768476 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
15 Hb_000022_220 0.1034768476 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
16 Hb_000045_120 0.1034768476 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
17 Hb_000056_320 0.1034768476 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_000066_110 0.1034768476 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01370 [Jatropha curcas]
19 Hb_000072_270 0.1034768476 - - JHL22C18.10 [Jatropha curcas]
20 Hb_000078_110 0.1034768476 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]

Gene co-expression network

sample Hb_005687_020 Hb_005687_020 Hb_000395_160 Hb_000395_160 Hb_005687_020--Hb_000395_160 Hb_163950_060 Hb_163950_060 Hb_005687_020--Hb_163950_060 Hb_011980_020 Hb_011980_020 Hb_005687_020--Hb_011980_020 Hb_004096_040 Hb_004096_040 Hb_005687_020--Hb_004096_040 Hb_186671_020 Hb_186671_020 Hb_005687_020--Hb_186671_020 Hb_001796_010 Hb_001796_010 Hb_005687_020--Hb_001796_010 Hb_000979_270 Hb_000979_270 Hb_000395_160--Hb_000979_270 Hb_000004_150 Hb_000004_150 Hb_000395_160--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_000395_160--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_000395_160--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_000395_160--Hb_000022_220 Hb_163950_060--Hb_011980_020 Hb_000336_170 Hb_000336_170 Hb_163950_060--Hb_000336_170 Hb_007943_040 Hb_007943_040 Hb_163950_060--Hb_007943_040 Hb_008978_010 Hb_008978_010 Hb_163950_060--Hb_008978_010 Hb_163950_060--Hb_186671_020 Hb_011980_020--Hb_007943_040 Hb_011980_020--Hb_000336_170 Hb_011980_020--Hb_001796_010 Hb_011980_020--Hb_008978_010 Hb_004096_040--Hb_000395_160 Hb_004096_040--Hb_186671_020 Hb_004096_040--Hb_163950_060 Hb_004096_040--Hb_000979_270 Hb_000876_060 Hb_000876_060 Hb_004096_040--Hb_000876_060 Hb_186671_020--Hb_001796_010 Hb_018609_010 Hb_018609_010 Hb_186671_020--Hb_018609_010 Hb_005050_010 Hb_005050_010 Hb_186671_020--Hb_005050_010 Hb_186671_020--Hb_000395_160 Hb_186671_020--Hb_000979_270 Hb_001796_010--Hb_018609_010 Hb_099085_010 Hb_099085_010 Hb_001796_010--Hb_099085_010 Hb_064583_010 Hb_064583_010 Hb_001796_010--Hb_064583_010 Hb_001796_010--Hb_163950_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24434 849.503 0.124218 10.788 4.88935 1.36682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0224503 0 0.00895206 0

CAGE analysis