Hb_064583_010

Information

Type -
Description -
Location Contig64583: 734-5503
Sequence    

Annotation

kegg
ID vvi:100251041
description germin-like protein subfamily 1 member 7
nr
ID XP_010659856.1
description PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
swissprot
ID P92999
description Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2
trembl
ID A0A067JW67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23602 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064583_010 0.0 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
2 Hb_099085_010 0.0153718082 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000563_370 0.0271427758 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
4 Hb_007328_020 0.0279353959 - - -
5 Hb_000215_380 0.0292905333 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
6 Hb_044724_020 0.0403309749 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
7 Hb_007264_050 0.0424752482 - - -
8 Hb_106595_010 0.0520451308 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
9 Hb_005050_010 0.0628235748 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
10 Hb_128894_010 0.0670827352 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000979_270 0.0784388358 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
12 Hb_001796_010 0.0791585538 - - purine transporter, putative [Ricinus communis]
13 Hb_034558_010 0.0824946607 - - -
14 Hb_018609_010 0.0908172552 - - conserved hypothetical protein [Ricinus communis]
15 Hb_186671_020 0.092719129 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_000004_150 0.0949997844 - - hypothetical protein RCOM_1382630 [Ricinus communis]
17 Hb_000007_170 0.0949997844 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
18 Hb_000010_280 0.0949997844 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
19 Hb_000022_220 0.0949997844 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
20 Hb_000045_120 0.0949997844 - - hypothetical protein JCGZ_01307 [Jatropha curcas]

Gene co-expression network

sample Hb_064583_010 Hb_064583_010 Hb_099085_010 Hb_099085_010 Hb_064583_010--Hb_099085_010 Hb_000563_370 Hb_000563_370 Hb_064583_010--Hb_000563_370 Hb_007328_020 Hb_007328_020 Hb_064583_010--Hb_007328_020 Hb_000215_380 Hb_000215_380 Hb_064583_010--Hb_000215_380 Hb_044724_020 Hb_044724_020 Hb_064583_010--Hb_044724_020 Hb_007264_050 Hb_007264_050 Hb_064583_010--Hb_007264_050 Hb_099085_010--Hb_000563_370 Hb_099085_010--Hb_007328_020 Hb_099085_010--Hb_000215_380 Hb_005050_010 Hb_005050_010 Hb_099085_010--Hb_005050_010 Hb_099085_010--Hb_007264_050 Hb_000563_370--Hb_007328_020 Hb_000563_370--Hb_000215_380 Hb_000563_370--Hb_044724_020 Hb_106595_010 Hb_106595_010 Hb_000563_370--Hb_106595_010 Hb_000563_370--Hb_007264_050 Hb_007328_020--Hb_000215_380 Hb_007328_020--Hb_044724_020 Hb_007328_020--Hb_106595_010 Hb_007328_020--Hb_007264_050 Hb_000215_380--Hb_044724_020 Hb_000215_380--Hb_106595_010 Hb_000215_380--Hb_007264_050 Hb_044724_020--Hb_106595_010 Hb_128894_010 Hb_128894_010 Hb_044724_020--Hb_128894_010 Hb_044724_020--Hb_007264_050 Hb_007264_050--Hb_106595_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 25.5728 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.466968 0

CAGE analysis