Hb_008978_010

Information

Type -
Description -
Location Contig8978: 286-1166
Sequence    

Annotation

kegg
ID rcu:RCOM_1173380
description transmembrane receptor, putative
nr
ID XP_002517883.1
description transmembrane receptor, putative [Ricinus communis]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID B9RVW4
description Transmembrane receptor, putative OS=Ricinus communis GN=RCOM_1173380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008978_010 0.0 - - transmembrane receptor, putative [Ricinus communis]
2 Hb_163950_060 0.0673057004 - - multidrug resistance pump, putative [Ricinus communis]
3 Hb_000333_150 0.0712931586 - - hypothetical protein RCOM_0711500 [Ricinus communis]
4 Hb_000336_170 0.0764342293 - - Polcalcin Jun o, putative [Ricinus communis]
5 Hb_186671_020 0.0818477493 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_011980_020 0.0835688994 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000261_540 0.0894762172 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
8 Hb_007943_040 0.1021790532 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
9 Hb_005687_020 0.1033049958 - - P66 protein [Hevea brasiliensis]
10 Hb_004096_040 0.1055209399 - - cytochrome P450, putative [Ricinus communis]
11 Hb_001796_010 0.1081545804 - - purine transporter, putative [Ricinus communis]
12 Hb_030469_010 0.1093053443 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
13 Hb_000395_160 0.1133185661 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
14 Hb_120917_010 0.1144574897 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
15 Hb_093204_010 0.1176537958 - - conserved hypothetical protein [Ricinus communis]
16 Hb_027556_080 0.1208774972 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
17 Hb_004994_070 0.1214501287 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
18 Hb_000004_150 0.1227586957 - - hypothetical protein RCOM_1382630 [Ricinus communis]
19 Hb_000007_170 0.1227586957 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
20 Hb_000010_280 0.1227586957 - - hypothetical protein JCGZ_13805 [Jatropha curcas]

Gene co-expression network

sample Hb_008978_010 Hb_008978_010 Hb_163950_060 Hb_163950_060 Hb_008978_010--Hb_163950_060 Hb_000333_150 Hb_000333_150 Hb_008978_010--Hb_000333_150 Hb_000336_170 Hb_000336_170 Hb_008978_010--Hb_000336_170 Hb_186671_020 Hb_186671_020 Hb_008978_010--Hb_186671_020 Hb_011980_020 Hb_011980_020 Hb_008978_010--Hb_011980_020 Hb_000261_540 Hb_000261_540 Hb_008978_010--Hb_000261_540 Hb_163950_060--Hb_011980_020 Hb_163950_060--Hb_000336_170 Hb_007943_040 Hb_007943_040 Hb_163950_060--Hb_007943_040 Hb_163950_060--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_163950_060--Hb_005687_020 Hb_004994_070 Hb_004994_070 Hb_000333_150--Hb_004994_070 Hb_000959_290 Hb_000959_290 Hb_000333_150--Hb_000959_290 Hb_044026_010 Hb_044026_010 Hb_000333_150--Hb_044026_010 Hb_078477_010 Hb_078477_010 Hb_000333_150--Hb_078477_010 Hb_093204_010 Hb_093204_010 Hb_000333_150--Hb_093204_010 Hb_000336_170--Hb_000261_540 Hb_000336_170--Hb_007943_040 Hb_000336_170--Hb_011980_020 Hb_009897_030 Hb_009897_030 Hb_000336_170--Hb_009897_030 Hb_001796_010 Hb_001796_010 Hb_186671_020--Hb_001796_010 Hb_018609_010 Hb_018609_010 Hb_186671_020--Hb_018609_010 Hb_005050_010 Hb_005050_010 Hb_186671_020--Hb_005050_010 Hb_000395_160 Hb_000395_160 Hb_186671_020--Hb_000395_160 Hb_000979_270 Hb_000979_270 Hb_186671_020--Hb_000979_270 Hb_011980_020--Hb_007943_040 Hb_011980_020--Hb_005687_020 Hb_011980_020--Hb_001796_010 Hb_000261_540--Hb_007943_040 Hb_000261_540--Hb_009897_030 Hb_000261_540--Hb_163950_060 Hb_004767_040 Hb_004767_040 Hb_000261_540--Hb_004767_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.4842 0.0474095 0.0596604 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis