Hb_004767_040

Information

Type -
Description -
Location Contig4767: 32816-35865
Sequence    

Annotation

kegg
ID rcu:RCOM_0476300
description Lysosomal Pro-X carboxypeptidase, putative (EC:3.4.16.2)
nr
ID XP_002523752.1
description Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q7TMR0
description Lysosomal Pro-X carboxypeptidase OS=Mus musculus GN=Prcp PE=2 SV=2
trembl
ID B9SCN3
description Lysosomal Pro-X carboxypeptidase, putative OS=Ricinus communis GN=RCOM_0476300 PE=4 SV=1
Gene Ontology
ID GO:0004180
description lysosomal pro-x carboxypeptidase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004767_040 0.0 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
2 Hb_039757_010 0.06834081 - - -
3 Hb_001405_180 0.0692321681 - - zinc finger protein, putative [Ricinus communis]
4 Hb_009897_030 0.0757742574 - - -
5 Hb_093204_010 0.0791322567 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000426_060 0.0794405342 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
7 Hb_002851_050 0.0843672463 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
8 Hb_006519_010 0.0860566534 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
9 Hb_000994_090 0.0886951521 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
10 Hb_000336_170 0.0899246323 - - Polcalcin Jun o, putative [Ricinus communis]
11 Hb_000261_540 0.091178504 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
12 Hb_002572_060 0.0914933592 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000426_070 0.0918178273 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
14 Hb_013057_010 0.0919898962 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
15 Hb_000592_040 0.0924005561 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004994_070 0.0976393932 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
17 Hb_000959_290 0.0981791785 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
18 Hb_000499_050 0.0997444532 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_007943_040 0.1018256059 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
20 Hb_001190_020 0.112035315 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004767_040 Hb_004767_040 Hb_039757_010 Hb_039757_010 Hb_004767_040--Hb_039757_010 Hb_001405_180 Hb_001405_180 Hb_004767_040--Hb_001405_180 Hb_009897_030 Hb_009897_030 Hb_004767_040--Hb_009897_030 Hb_093204_010 Hb_093204_010 Hb_004767_040--Hb_093204_010 Hb_000426_060 Hb_000426_060 Hb_004767_040--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_004767_040--Hb_002851_050 Hb_039757_010--Hb_001405_180 Hb_039757_010--Hb_000426_060 Hb_039757_010--Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_039757_010--Hb_000994_090 Hb_039757_010--Hb_009897_030 Hb_000426_070 Hb_000426_070 Hb_039757_010--Hb_000426_070 Hb_001405_180--Hb_000426_060 Hb_001405_180--Hb_002851_050 Hb_001405_180--Hb_000994_090 Hb_001405_180--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_001405_180--Hb_000592_040 Hb_007943_040 Hb_007943_040 Hb_009897_030--Hb_007943_040 Hb_009897_030--Hb_001405_180 Hb_009897_030--Hb_000426_060 Hb_011980_020 Hb_011980_020 Hb_009897_030--Hb_011980_020 Hb_011111_010 Hb_011111_010 Hb_093204_010--Hb_011111_010 Hb_004994_070 Hb_004994_070 Hb_093204_010--Hb_004994_070 Hb_000959_290 Hb_000959_290 Hb_093204_010--Hb_000959_290 Hb_006519_010 Hb_006519_010 Hb_093204_010--Hb_006519_010 Hb_002572_060 Hb_002572_060 Hb_093204_010--Hb_002572_060 Hb_000426_060--Hb_002851_050 Hb_000426_060--Hb_000994_090 Hb_000426_060--Hb_000426_070 Hb_000426_060--Hb_000592_040 Hb_002851_050--Hb_000994_090 Hb_002851_050--Hb_000426_070 Hb_002851_050--Hb_000592_040 Hb_000499_050 Hb_000499_050 Hb_002851_050--Hb_000499_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0138345 41.9 0.282535 3.85731 0.0388694 0.0260135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0518591

CAGE analysis