Hb_000994_090

Information

Type -
Description -
Location Contig994: 63121-65832
Sequence    

Annotation

kegg
ID rcu:RCOM_1439710
description Indole-3-acetic acid-amido synthetase GH3.17, putative
nr
ID XP_012082724.1
description PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
swissprot
ID O82243
description Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1
trembl
ID B9T0V7
description Indole-3-acetic acid-amido synthetase GH3.17, putative OS=Ricinus communis GN=RCOM_1439710 PE=4 SV=1
Gene Ontology
ID GO:0009941
description indole-3-acetic acid-amido synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000994_090 0.0 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
2 Hb_000426_070 0.0046974565 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
3 Hb_000592_040 0.0055533867 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002851_050 0.0068925767 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
5 Hb_000426_060 0.0155288381 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
6 Hb_000499_050 0.0159034257 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_001405_180 0.0408293875 - - zinc finger protein, putative [Ricinus communis]
8 Hb_039757_010 0.0447905479 - - -
9 Hb_001693_030 0.0467746483 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
10 Hb_117335_020 0.0474439738 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
11 Hb_023675_020 0.0653500533 - - acc synthase, putative [Ricinus communis]
12 Hb_004767_040 0.0886951521 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
13 Hb_000103_280 0.08985332 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
14 Hb_009897_030 0.0934015199 - - -
15 Hb_010615_010 0.0951383495 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
16 Hb_001784_010 0.1006076763 - - nutrient reservoir, putative [Ricinus communis]
17 Hb_008296_010 0.1020815071 - - -
18 Hb_009230_050 0.1074389083 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
19 Hb_010368_040 0.1108763649 - - conserved hypothetical protein [Ricinus communis]
20 Hb_052530_030 0.1232593038 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]

Gene co-expression network

sample Hb_000994_090 Hb_000994_090 Hb_000426_070 Hb_000426_070 Hb_000994_090--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_000994_090--Hb_000592_040 Hb_002851_050 Hb_002851_050 Hb_000994_090--Hb_002851_050 Hb_000426_060 Hb_000426_060 Hb_000994_090--Hb_000426_060 Hb_000499_050 Hb_000499_050 Hb_000994_090--Hb_000499_050 Hb_001405_180 Hb_001405_180 Hb_000994_090--Hb_001405_180 Hb_000426_070--Hb_000592_040 Hb_000426_070--Hb_000499_050 Hb_000426_070--Hb_002851_050 Hb_000426_070--Hb_000426_060 Hb_117335_020 Hb_117335_020 Hb_000426_070--Hb_117335_020 Hb_000592_040--Hb_000499_050 Hb_000592_040--Hb_002851_050 Hb_000592_040--Hb_000426_060 Hb_000592_040--Hb_117335_020 Hb_002851_050--Hb_000426_060 Hb_002851_050--Hb_000499_050 Hb_002851_050--Hb_001405_180 Hb_000426_060--Hb_001405_180 Hb_039757_010 Hb_039757_010 Hb_000426_060--Hb_039757_010 Hb_000499_050--Hb_000426_060 Hb_000499_050--Hb_117335_020 Hb_001405_180--Hb_039757_010 Hb_001405_180--Hb_000426_070 Hb_001405_180--Hb_000592_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.293226 0 0.0423819 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis