Hb_000592_040

Information

Type -
Description -
Location Contig592: 89953-90569
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000592_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000426_070 0.000855957 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
3 Hb_000994_090 0.0055533867 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
4 Hb_000499_050 0.0103511054 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_002851_050 0.0124453786 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
6 Hb_000426_060 0.0210799489 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
7 Hb_117335_020 0.0419026038 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
8 Hb_001693_030 0.044096145 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
9 Hb_001405_180 0.0463688226 - - zinc finger protein, putative [Ricinus communis]
10 Hb_039757_010 0.0503271692 - - -
11 Hb_023675_020 0.0598194041 - - acc synthase, putative [Ricinus communis]
12 Hb_000103_280 0.0843417919 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
13 Hb_010615_010 0.0896315479 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
14 Hb_004767_040 0.0924005561 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
15 Hb_001784_010 0.0951059729 - - nutrient reservoir, putative [Ricinus communis]
16 Hb_008296_010 0.0965812125 - - -
17 Hb_009897_030 0.098877821 - - -
18 Hb_009230_050 0.101943856 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
19 Hb_010368_040 0.1138822602 - - conserved hypothetical protein [Ricinus communis]
20 Hb_052530_030 0.1201990574 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]

Gene co-expression network

sample Hb_000592_040 Hb_000592_040 Hb_000426_070 Hb_000426_070 Hb_000592_040--Hb_000426_070 Hb_000994_090 Hb_000994_090 Hb_000592_040--Hb_000994_090 Hb_000499_050 Hb_000499_050 Hb_000592_040--Hb_000499_050 Hb_002851_050 Hb_002851_050 Hb_000592_040--Hb_002851_050 Hb_000426_060 Hb_000426_060 Hb_000592_040--Hb_000426_060 Hb_117335_020 Hb_117335_020 Hb_000592_040--Hb_117335_020 Hb_000426_070--Hb_000994_090 Hb_000426_070--Hb_000499_050 Hb_000426_070--Hb_002851_050 Hb_000426_070--Hb_000426_060 Hb_000426_070--Hb_117335_020 Hb_000994_090--Hb_002851_050 Hb_000994_090--Hb_000426_060 Hb_000994_090--Hb_000499_050 Hb_001405_180 Hb_001405_180 Hb_000994_090--Hb_001405_180 Hb_000499_050--Hb_002851_050 Hb_000499_050--Hb_000426_060 Hb_000499_050--Hb_117335_020 Hb_002851_050--Hb_000426_060 Hb_002851_050--Hb_001405_180 Hb_000426_060--Hb_001405_180 Hb_039757_010 Hb_039757_010 Hb_000426_060--Hb_039757_010 Hb_023675_020 Hb_023675_020 Hb_117335_020--Hb_023675_020 Hb_000103_280 Hb_000103_280 Hb_117335_020--Hb_000103_280 Hb_001693_030 Hb_001693_030 Hb_117335_020--Hb_001693_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.485302 0 0.0729397 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis