Hb_023675_020

Information

Type -
Description -
Location Contig23675: 12523-14152
Sequence    

Annotation

kegg
ID rcu:RCOM_1048130
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_002514161.1
description acc synthase, putative [Ricinus communis]
swissprot
ID Q9STR4
description 1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1
trembl
ID B9RKB7
description Acc synthase, putative OS=Ricinus communis GN=RCOM_1048130 PE=3 SV=1
Gene Ontology
ID GO:0016847
description 1-aminocyclopropane-1-carboxylate synthase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023675_020 0.0 - - acc synthase, putative [Ricinus communis]
2 Hb_117335_020 0.0179595843 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
3 Hb_000103_280 0.024630993 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
4 Hb_010615_010 0.0299510592 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
5 Hb_001784_010 0.0354592449 - - nutrient reservoir, putative [Ricinus communis]
6 Hb_008296_010 0.0369439883 - - -
7 Hb_009230_050 0.0423425949 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
8 Hb_000499_050 0.0494993598 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001693_030 0.0568265253 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
10 Hb_000592_040 0.0598194041 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000426_070 0.0606721389 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
12 Hb_070850_010 0.0641891548 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
13 Hb_007556_010 0.0652149082 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
14 Hb_000994_090 0.0653500533 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
15 Hb_003938_150 0.0668466237 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
16 Hb_002851_050 0.0722076637 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
17 Hb_000426_060 0.0807891263 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
18 Hb_013862_010 0.0842853643 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
19 Hb_023502_010 0.1006576181 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
20 Hb_052530_030 0.1012790229 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]

Gene co-expression network

sample Hb_023675_020 Hb_023675_020 Hb_117335_020 Hb_117335_020 Hb_023675_020--Hb_117335_020 Hb_000103_280 Hb_000103_280 Hb_023675_020--Hb_000103_280 Hb_010615_010 Hb_010615_010 Hb_023675_020--Hb_010615_010 Hb_001784_010 Hb_001784_010 Hb_023675_020--Hb_001784_010 Hb_008296_010 Hb_008296_010 Hb_023675_020--Hb_008296_010 Hb_009230_050 Hb_009230_050 Hb_023675_020--Hb_009230_050 Hb_000499_050 Hb_000499_050 Hb_117335_020--Hb_000499_050 Hb_000592_040 Hb_000592_040 Hb_117335_020--Hb_000592_040 Hb_117335_020--Hb_000103_280 Hb_000426_070 Hb_000426_070 Hb_117335_020--Hb_000426_070 Hb_001693_030 Hb_001693_030 Hb_117335_020--Hb_001693_030 Hb_000103_280--Hb_010615_010 Hb_000103_280--Hb_001784_010 Hb_000103_280--Hb_008296_010 Hb_000103_280--Hb_009230_050 Hb_070850_010 Hb_070850_010 Hb_000103_280--Hb_070850_010 Hb_010615_010--Hb_001784_010 Hb_010615_010--Hb_008296_010 Hb_010615_010--Hb_009230_050 Hb_010615_010--Hb_070850_010 Hb_001784_010--Hb_008296_010 Hb_001784_010--Hb_009230_050 Hb_001784_010--Hb_070850_010 Hb_007556_010 Hb_007556_010 Hb_001784_010--Hb_007556_010 Hb_008296_010--Hb_009230_050 Hb_008296_010--Hb_070850_010 Hb_008296_010--Hb_007556_010 Hb_009230_050--Hb_070850_010 Hb_009230_050--Hb_007556_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0578734 0 0.0128505 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis