Hb_000103_280

Information

Type transcription factor
Description TF Family: HSF
Location Contig103: 250511-252060
Sequence    

Annotation

kegg
ID rcu:RCOM_0911060
description Heat shock factor protein HSF30, putative
nr
ID XP_002517070.1
description Heat shock factor protein HSF30, putative [Ricinus communis]
swissprot
ID Q9LUH8
description Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1
trembl
ID B9RTK1
description Heat shock factor protein HSF30, putative OS=Ricinus communis GN=RCOM_0911060 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-6b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_280 0.0 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
2 Hb_010615_010 0.0053229819 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
3 Hb_001784_010 0.0108352113 - - nutrient reservoir, putative [Ricinus communis]
4 Hb_008296_010 0.0123212193 - - -
5 Hb_009230_050 0.0177250355 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
6 Hb_023675_020 0.024630993 - - acc synthase, putative [Ricinus communis]
7 Hb_070850_010 0.0396019948 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
8 Hb_007556_010 0.0406295251 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
9 Hb_003938_150 0.042264129 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
10 Hb_117335_020 0.0425753458 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
11 Hb_013862_010 0.0688239171 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
12 Hb_000499_050 0.0740529602 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_023502_010 0.0761510387 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
14 Hb_001693_030 0.0763442689 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
15 Hb_000206_280 0.0788762024 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
16 Hb_000592_040 0.0843417919 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000426_070 0.0851916896 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
18 Hb_000994_090 0.08985332 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
19 Hb_002851_050 0.0966848087 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
20 Hb_052530_030 0.1029108648 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_280 Hb_000103_280 Hb_010615_010 Hb_010615_010 Hb_000103_280--Hb_010615_010 Hb_001784_010 Hb_001784_010 Hb_000103_280--Hb_001784_010 Hb_008296_010 Hb_008296_010 Hb_000103_280--Hb_008296_010 Hb_009230_050 Hb_009230_050 Hb_000103_280--Hb_009230_050 Hb_023675_020 Hb_023675_020 Hb_000103_280--Hb_023675_020 Hb_070850_010 Hb_070850_010 Hb_000103_280--Hb_070850_010 Hb_010615_010--Hb_001784_010 Hb_010615_010--Hb_008296_010 Hb_010615_010--Hb_009230_050 Hb_010615_010--Hb_023675_020 Hb_010615_010--Hb_070850_010 Hb_001784_010--Hb_008296_010 Hb_001784_010--Hb_009230_050 Hb_001784_010--Hb_070850_010 Hb_007556_010 Hb_007556_010 Hb_001784_010--Hb_007556_010 Hb_008296_010--Hb_009230_050 Hb_008296_010--Hb_070850_010 Hb_008296_010--Hb_007556_010 Hb_009230_050--Hb_070850_010 Hb_009230_050--Hb_007556_010 Hb_117335_020 Hb_117335_020 Hb_023675_020--Hb_117335_020 Hb_023675_020--Hb_001784_010 Hb_023675_020--Hb_008296_010 Hb_023675_020--Hb_009230_050 Hb_070850_010--Hb_007556_010 Hb_003938_150 Hb_003938_150 Hb_070850_010--Hb_003938_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0719682 0 0.0185113 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis