Hb_009230_050

Information

Type -
Description -
Location Contig9230: 55488-56908
Sequence    

Annotation

kegg
ID tcc:TCM_007159
description Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
nr
ID XP_012093202.1
description PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
swissprot
ID Q9LT67
description Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1
trembl
ID A0A061E7Y5
description Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_007159 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor bhlh113-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009230_050 0.0 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
2 Hb_008296_010 0.0054046223 - - -
3 Hb_001784_010 0.0068907303 - - nutrient reservoir, putative [Ricinus communis]
4 Hb_010615_010 0.0124028622 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
5 Hb_000103_280 0.0177250355 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
6 Hb_070850_010 0.0218869964 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
7 Hb_007556_010 0.0229152531 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
8 Hb_003938_150 0.024551058 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
9 Hb_023675_020 0.0423425949 - - acc synthase, putative [Ricinus communis]
10 Hb_023502_010 0.0584746841 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_117335_020 0.0602662947 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
12 Hb_000206_280 0.0612037219 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
13 Hb_013862_010 0.0614695859 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
14 Hb_007235_040 0.0886871004 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000499_050 0.0916826659 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_001693_030 0.0918649719 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
17 Hb_010028_010 0.0920618783 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
18 Hb_000592_040 0.101943856 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000426_070 0.1027912905 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
20 Hb_000994_090 0.1074389083 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]

Gene co-expression network

sample Hb_009230_050 Hb_009230_050 Hb_008296_010 Hb_008296_010 Hb_009230_050--Hb_008296_010 Hb_001784_010 Hb_001784_010 Hb_009230_050--Hb_001784_010 Hb_010615_010 Hb_010615_010 Hb_009230_050--Hb_010615_010 Hb_000103_280 Hb_000103_280 Hb_009230_050--Hb_000103_280 Hb_070850_010 Hb_070850_010 Hb_009230_050--Hb_070850_010 Hb_007556_010 Hb_007556_010 Hb_009230_050--Hb_007556_010 Hb_008296_010--Hb_001784_010 Hb_008296_010--Hb_010615_010 Hb_008296_010--Hb_000103_280 Hb_008296_010--Hb_070850_010 Hb_008296_010--Hb_007556_010 Hb_001784_010--Hb_010615_010 Hb_001784_010--Hb_000103_280 Hb_001784_010--Hb_070850_010 Hb_001784_010--Hb_007556_010 Hb_010615_010--Hb_000103_280 Hb_023675_020 Hb_023675_020 Hb_010615_010--Hb_023675_020 Hb_010615_010--Hb_070850_010 Hb_000103_280--Hb_023675_020 Hb_000103_280--Hb_070850_010 Hb_070850_010--Hb_007556_010 Hb_003938_150 Hb_003938_150 Hb_070850_010--Hb_003938_150 Hb_007556_010--Hb_003938_150 Hb_007556_010--Hb_010615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.159804 0 0.0455158 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis