Hb_007556_010

Information

Type -
Description -
Location Contig7556: 5383-6110
Sequence    

Annotation

kegg
ID ath:AT5G35830
description ankyrin repeat-containing protein
nr
ID XP_011020234.1
description PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
swissprot
ID Q9HFE7
description Ankyrin repeat-containing protein P16F5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP16F5.05c PE=3 SV=1
trembl
ID A0A067KMI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06771 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57022: 5623-5978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007556_010 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
2 Hb_070850_010 0.0010285731 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
3 Hb_003938_150 0.0016363671 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
4 Hb_009230_050 0.0229152531 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
5 Hb_008296_010 0.0283176321 - - -
6 Hb_001784_010 0.0298029662 - - nutrient reservoir, putative [Ricinus communis]
7 Hb_010615_010 0.0353116245 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
8 Hb_023502_010 0.035587114 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
9 Hb_000206_280 0.0383195444 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
10 Hb_000103_280 0.0406295251 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
11 Hb_013862_010 0.0588825863 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
12 Hb_023675_020 0.0652149082 - - acc synthase, putative [Ricinus communis]
13 Hb_007235_040 0.065846231 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_010028_010 0.0692274196 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
15 Hb_117335_020 0.0831013425 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
16 Hb_085910_010 0.1007206137 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_012753_100 0.1125323128 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001693_030 0.11280875 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
19 Hb_000499_050 0.1144208132 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_001998_130 0.1158352827 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007556_010 Hb_007556_010 Hb_070850_010 Hb_070850_010 Hb_007556_010--Hb_070850_010 Hb_003938_150 Hb_003938_150 Hb_007556_010--Hb_003938_150 Hb_009230_050 Hb_009230_050 Hb_007556_010--Hb_009230_050 Hb_008296_010 Hb_008296_010 Hb_007556_010--Hb_008296_010 Hb_001784_010 Hb_001784_010 Hb_007556_010--Hb_001784_010 Hb_010615_010 Hb_010615_010 Hb_007556_010--Hb_010615_010 Hb_070850_010--Hb_003938_150 Hb_070850_010--Hb_009230_050 Hb_070850_010--Hb_008296_010 Hb_070850_010--Hb_001784_010 Hb_070850_010--Hb_010615_010 Hb_003938_150--Hb_009230_050 Hb_003938_150--Hb_008296_010 Hb_003938_150--Hb_001784_010 Hb_023502_010 Hb_023502_010 Hb_003938_150--Hb_023502_010 Hb_009230_050--Hb_008296_010 Hb_009230_050--Hb_001784_010 Hb_009230_050--Hb_010615_010 Hb_000103_280 Hb_000103_280 Hb_009230_050--Hb_000103_280 Hb_008296_010--Hb_001784_010 Hb_008296_010--Hb_010615_010 Hb_008296_010--Hb_000103_280 Hb_001784_010--Hb_010615_010 Hb_001784_010--Hb_000103_280 Hb_010615_010--Hb_000103_280 Hb_023675_020 Hb_023675_020 Hb_010615_010--Hb_023675_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.173386 0 0.0561104 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis