Hb_001784_010

Information

Type -
Description -
Location Contig1784: 1717-4232
Sequence    

Annotation

kegg
ID rcu:RCOM_0706280
description nutrient reservoir, putative
nr
ID XP_002516095.1
description nutrient reservoir, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQS6
description Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0706280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001784_010 0.0 - - nutrient reservoir, putative [Ricinus communis]
2 Hb_008296_010 0.0014861451 - - -
3 Hb_010615_010 0.0055124516 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
4 Hb_009230_050 0.0068907303 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
5 Hb_000103_280 0.0108352113 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
6 Hb_070850_010 0.0287749397 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
7 Hb_007556_010 0.0298029662 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
8 Hb_003938_150 0.0314383871 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
9 Hb_023675_020 0.0354592449 - - acc synthase, putative [Ricinus communis]
10 Hb_117335_020 0.053391871 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
11 Hb_013862_010 0.0638492469 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
12 Hb_023502_010 0.0653494379 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_000206_280 0.0680771042 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
14 Hb_000499_050 0.0848335658 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_001693_030 0.0857377966 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
16 Hb_000592_040 0.0951059729 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007235_040 0.0955439673 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000426_070 0.0959544032 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
19 Hb_010028_010 0.0989163953 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
20 Hb_000994_090 0.1006076763 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]

Gene co-expression network

sample Hb_001784_010 Hb_001784_010 Hb_008296_010 Hb_008296_010 Hb_001784_010--Hb_008296_010 Hb_010615_010 Hb_010615_010 Hb_001784_010--Hb_010615_010 Hb_009230_050 Hb_009230_050 Hb_001784_010--Hb_009230_050 Hb_000103_280 Hb_000103_280 Hb_001784_010--Hb_000103_280 Hb_070850_010 Hb_070850_010 Hb_001784_010--Hb_070850_010 Hb_007556_010 Hb_007556_010 Hb_001784_010--Hb_007556_010 Hb_008296_010--Hb_009230_050 Hb_008296_010--Hb_010615_010 Hb_008296_010--Hb_000103_280 Hb_008296_010--Hb_070850_010 Hb_008296_010--Hb_007556_010 Hb_010615_010--Hb_000103_280 Hb_010615_010--Hb_009230_050 Hb_023675_020 Hb_023675_020 Hb_010615_010--Hb_023675_020 Hb_010615_010--Hb_070850_010 Hb_009230_050--Hb_000103_280 Hb_009230_050--Hb_070850_010 Hb_009230_050--Hb_007556_010 Hb_000103_280--Hb_023675_020 Hb_000103_280--Hb_070850_010 Hb_070850_010--Hb_007556_010 Hb_003938_150 Hb_003938_150 Hb_070850_010--Hb_003938_150 Hb_007556_010--Hb_003938_150 Hb_007556_010--Hb_010615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.420684 0 0.115205 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis