Hb_000499_050

Information

Type -
Description -
Location Contig499: 112586-117341
Sequence    

Annotation

kegg
ID sot:102605741
description uncharacterized LOC102605741
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061DW51
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000499_050 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000592_040 0.0103511054 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000426_070 0.0112069477 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
4 Hb_000994_090 0.0159034257 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
5 Hb_002851_050 0.0227930063 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
6 Hb_000426_060 0.031422776 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
7 Hb_117335_020 0.0315659079 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
8 Hb_001693_030 0.0406808581 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
9 Hb_023675_020 0.0494993598 - - acc synthase, putative [Ricinus communis]
10 Hb_001405_180 0.0566851504 - - zinc finger protein, putative [Ricinus communis]
11 Hb_039757_010 0.06063753 - - -
12 Hb_000103_280 0.0740529602 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
13 Hb_010615_010 0.0793505939 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
14 Hb_001784_010 0.0848335658 - - nutrient reservoir, putative [Ricinus communis]
15 Hb_008296_010 0.0863111755 - - -
16 Hb_009230_050 0.0916826659 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
17 Hb_004767_040 0.0997444532 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
18 Hb_009897_030 0.1090677268 - - -
19 Hb_070850_010 0.1134017085 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
20 Hb_007556_010 0.1144208132 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000499_050 Hb_000499_050 Hb_000592_040 Hb_000592_040 Hb_000499_050--Hb_000592_040 Hb_000426_070 Hb_000426_070 Hb_000499_050--Hb_000426_070 Hb_000994_090 Hb_000994_090 Hb_000499_050--Hb_000994_090 Hb_002851_050 Hb_002851_050 Hb_000499_050--Hb_002851_050 Hb_000426_060 Hb_000426_060 Hb_000499_050--Hb_000426_060 Hb_117335_020 Hb_117335_020 Hb_000499_050--Hb_117335_020 Hb_000592_040--Hb_000426_070 Hb_000592_040--Hb_000994_090 Hb_000592_040--Hb_002851_050 Hb_000592_040--Hb_000426_060 Hb_000592_040--Hb_117335_020 Hb_000426_070--Hb_000994_090 Hb_000426_070--Hb_002851_050 Hb_000426_070--Hb_000426_060 Hb_000426_070--Hb_117335_020 Hb_000994_090--Hb_002851_050 Hb_000994_090--Hb_000426_060 Hb_001405_180 Hb_001405_180 Hb_000994_090--Hb_001405_180 Hb_002851_050--Hb_000426_060 Hb_002851_050--Hb_001405_180 Hb_000426_060--Hb_001405_180 Hb_039757_010 Hb_039757_010 Hb_000426_060--Hb_039757_010 Hb_023675_020 Hb_023675_020 Hb_117335_020--Hb_023675_020 Hb_000103_280 Hb_000103_280 Hb_117335_020--Hb_000103_280 Hb_001693_030 Hb_001693_030 Hb_117335_020--Hb_001693_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0515518 0 0.00832142 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis