Hb_000426_060

Information

Type -
Description -
Location Contig426: 85782-87394
Sequence    

Annotation

kegg
ID cit:102610546
description G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370-like
nr
ID KDO58621.1
description hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
swissprot
ID Q39688
description Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1
trembl
ID A0A067F5Z7
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048192mg PE=4 SV=1
Gene Ontology
ID GO:0016772
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000426_060 0.0 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
2 Hb_002851_050 0.0086374526 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
3 Hb_000994_090 0.0155288381 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
4 Hb_000426_070 0.0202244439 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
5 Hb_000592_040 0.0210799489 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001405_180 0.0253229584 - - zinc finger protein, putative [Ricinus communis]
7 Hb_039757_010 0.0292904151 - - -
8 Hb_000499_050 0.031422776 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001693_030 0.0565173877 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
10 Hb_117335_020 0.0629200167 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
11 Hb_009897_030 0.0780523004 - - -
12 Hb_004767_040 0.0794405342 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
13 Hb_023675_020 0.0807891263 - - acc synthase, putative [Ricinus communis]
14 Hb_010368_040 0.1035519451 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000103_280 0.1052296809 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
16 Hb_010615_010 0.1104995541 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
17 Hb_001784_010 0.1159526388 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_008296_010 0.117421999 - - -
19 Hb_007943_040 0.1188167213 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
20 Hb_009230_050 0.1227628231 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]

Gene co-expression network

sample Hb_000426_060 Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_000426_060--Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_000426_060--Hb_000994_090 Hb_000426_070 Hb_000426_070 Hb_000426_060--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_000426_060--Hb_000592_040 Hb_001405_180 Hb_001405_180 Hb_000426_060--Hb_001405_180 Hb_039757_010 Hb_039757_010 Hb_000426_060--Hb_039757_010 Hb_002851_050--Hb_000994_090 Hb_002851_050--Hb_000426_070 Hb_002851_050--Hb_000592_040 Hb_000499_050 Hb_000499_050 Hb_002851_050--Hb_000499_050 Hb_002851_050--Hb_001405_180 Hb_000994_090--Hb_000426_070 Hb_000994_090--Hb_000592_040 Hb_000994_090--Hb_000499_050 Hb_000994_090--Hb_001405_180 Hb_000426_070--Hb_000592_040 Hb_000426_070--Hb_000499_050 Hb_117335_020 Hb_117335_020 Hb_000426_070--Hb_117335_020 Hb_000592_040--Hb_000499_050 Hb_000592_040--Hb_117335_020 Hb_001405_180--Hb_039757_010 Hb_001405_180--Hb_000426_070 Hb_001405_180--Hb_000592_040 Hb_039757_010--Hb_002851_050 Hb_039757_010--Hb_000994_090 Hb_009897_030 Hb_009897_030 Hb_039757_010--Hb_009897_030 Hb_039757_010--Hb_000426_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0806799 0 0.0104209 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis