Hb_009897_030

Information

Type -
Description -
Location Contig9897: 16226-16348
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009897_030 0.0 - - -
2 Hb_007943_040 0.0416568185 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
3 Hb_039757_010 0.0489620243 - - -
4 Hb_001405_180 0.0529143303 - - zinc finger protein, putative [Ricinus communis]
5 Hb_004767_040 0.0757742574 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
6 Hb_000426_060 0.0780523004 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
7 Hb_011980_020 0.0844934255 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_013057_010 0.0857666572 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
9 Hb_002851_050 0.086595442 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
10 Hb_000261_540 0.086840286 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
11 Hb_000336_170 0.08738984 - - Polcalcin Jun o, putative [Ricinus communis]
12 Hb_000994_090 0.0934015199 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
13 Hb_000426_070 0.0980341873 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
14 Hb_000592_040 0.098877821 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010368_040 0.1002255211 - - conserved hypothetical protein [Ricinus communis]
16 Hb_163950_060 0.1005052675 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_000499_050 0.1090677268 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_093204_010 0.1114989041 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006519_010 0.112179936 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
20 Hb_005588_150 0.1180721579 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009897_030 Hb_009897_030 Hb_007943_040 Hb_007943_040 Hb_009897_030--Hb_007943_040 Hb_039757_010 Hb_039757_010 Hb_009897_030--Hb_039757_010 Hb_001405_180 Hb_001405_180 Hb_009897_030--Hb_001405_180 Hb_004767_040 Hb_004767_040 Hb_009897_030--Hb_004767_040 Hb_000426_060 Hb_000426_060 Hb_009897_030--Hb_000426_060 Hb_011980_020 Hb_011980_020 Hb_009897_030--Hb_011980_020 Hb_007943_040--Hb_011980_020 Hb_163950_060 Hb_163950_060 Hb_007943_040--Hb_163950_060 Hb_000336_170 Hb_000336_170 Hb_007943_040--Hb_000336_170 Hb_000261_540 Hb_000261_540 Hb_007943_040--Hb_000261_540 Hb_013057_010 Hb_013057_010 Hb_007943_040--Hb_013057_010 Hb_039757_010--Hb_001405_180 Hb_039757_010--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_039757_010--Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_039757_010--Hb_000994_090 Hb_000426_070 Hb_000426_070 Hb_039757_010--Hb_000426_070 Hb_001405_180--Hb_000426_060 Hb_001405_180--Hb_002851_050 Hb_001405_180--Hb_000994_090 Hb_001405_180--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_001405_180--Hb_000592_040 Hb_004767_040--Hb_039757_010 Hb_004767_040--Hb_001405_180 Hb_093204_010 Hb_093204_010 Hb_004767_040--Hb_093204_010 Hb_004767_040--Hb_000426_060 Hb_004767_040--Hb_002851_050 Hb_000426_060--Hb_002851_050 Hb_000426_060--Hb_000994_090 Hb_000426_060--Hb_000426_070 Hb_000426_060--Hb_000592_040 Hb_011980_020--Hb_163950_060 Hb_005687_020 Hb_005687_020 Hb_011980_020--Hb_005687_020 Hb_011980_020--Hb_000336_170 Hb_001796_010 Hb_001796_010 Hb_011980_020--Hb_001796_010 Hb_008978_010 Hb_008978_010 Hb_011980_020--Hb_008978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4842.18 0 323.056 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis