Hb_000261_540

Information

Type -
Description -
Location Contig261: 538714-540051
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24870g
description POPTRDRAFT_561695; nucleoid DNA-binding family protein
nr
ID XP_012076382.1
description PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
swissprot
ID Q9LS40
description Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1
trembl
ID A0A067KBH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07053 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nucleoid dna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_540 0.0 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
2 Hb_000336_170 0.0604897749 - - Polcalcin Jun o, putative [Ricinus communis]
3 Hb_007943_040 0.0794734342 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
4 Hb_009897_030 0.086840286 - - -
5 Hb_008978_010 0.0894762172 - - transmembrane receptor, putative [Ricinus communis]
6 Hb_163950_060 0.0905352478 - - multidrug resistance pump, putative [Ricinus communis]
7 Hb_004767_040 0.091178504 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
8 Hb_093204_010 0.0928858 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011980_020 0.0933321855 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_013057_010 0.1007244977 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
11 Hb_000333_150 0.1012934118 - - hypothetical protein RCOM_0711500 [Ricinus communis]
12 Hb_006519_010 0.1050992144 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
13 Hb_004994_070 0.1056867352 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
14 Hb_027556_080 0.1113620308 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
15 Hb_000959_290 0.1135225725 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
16 Hb_039757_010 0.1154349424 - - -
17 Hb_120917_010 0.1155974152 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
18 Hb_003973_050 0.1171672595 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
19 Hb_001405_180 0.118297292 - - zinc finger protein, putative [Ricinus communis]
20 Hb_005588_150 0.1190235799 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000261_540 Hb_000261_540 Hb_000336_170 Hb_000336_170 Hb_000261_540--Hb_000336_170 Hb_007943_040 Hb_007943_040 Hb_000261_540--Hb_007943_040 Hb_009897_030 Hb_009897_030 Hb_000261_540--Hb_009897_030 Hb_008978_010 Hb_008978_010 Hb_000261_540--Hb_008978_010 Hb_163950_060 Hb_163950_060 Hb_000261_540--Hb_163950_060 Hb_004767_040 Hb_004767_040 Hb_000261_540--Hb_004767_040 Hb_000336_170--Hb_163950_060 Hb_000336_170--Hb_007943_040 Hb_000336_170--Hb_008978_010 Hb_011980_020 Hb_011980_020 Hb_000336_170--Hb_011980_020 Hb_000336_170--Hb_009897_030 Hb_007943_040--Hb_009897_030 Hb_007943_040--Hb_011980_020 Hb_007943_040--Hb_163950_060 Hb_013057_010 Hb_013057_010 Hb_007943_040--Hb_013057_010 Hb_039757_010 Hb_039757_010 Hb_009897_030--Hb_039757_010 Hb_001405_180 Hb_001405_180 Hb_009897_030--Hb_001405_180 Hb_009897_030--Hb_004767_040 Hb_000426_060 Hb_000426_060 Hb_009897_030--Hb_000426_060 Hb_009897_030--Hb_011980_020 Hb_008978_010--Hb_163950_060 Hb_000333_150 Hb_000333_150 Hb_008978_010--Hb_000333_150 Hb_186671_020 Hb_186671_020 Hb_008978_010--Hb_186671_020 Hb_008978_010--Hb_011980_020 Hb_163950_060--Hb_011980_020 Hb_163950_060--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_163950_060--Hb_005687_020 Hb_004767_040--Hb_039757_010 Hb_004767_040--Hb_001405_180 Hb_093204_010 Hb_093204_010 Hb_004767_040--Hb_093204_010 Hb_004767_040--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_004767_040--Hb_002851_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0270921 4.63766 0.034312 0.212254 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis