Hb_002851_050

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig2851: 88684-89639
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03640g
description POPTRDRAFT_551008; myb family transcription factor family protein
nr
ID XP_002300766.1
description myb family transcription factor family protein [Populus trichocarpa]
swissprot
ID Q1A173
description Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
trembl
ID B9GRM8
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0002s03640g PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002851_050 0.0 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
2 Hb_000994_090 0.0068925767 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
3 Hb_000426_060 0.0086374526 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
4 Hb_000426_070 0.0115895716 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
5 Hb_000592_040 0.0124453786 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000499_050 0.0227930063 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_001405_180 0.0339498711 - - zinc finger protein, putative [Ricinus communis]
8 Hb_039757_010 0.0379141222 - - -
9 Hb_001693_030 0.0507480236 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
10 Hb_117335_020 0.0543166949 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
11 Hb_023675_020 0.0722076637 - - acc synthase, putative [Ricinus communis]
12 Hb_004767_040 0.0843672463 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
13 Hb_009897_030 0.086595442 - - -
14 Hb_000103_280 0.0966848087 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
15 Hb_010615_010 0.10196347 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
16 Hb_010368_040 0.1074171213 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001784_010 0.1074259551 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_008296_010 0.1088978999 - - -
19 Hb_009230_050 0.1142482979 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
20 Hb_000045_110 0.1254508086 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]

Gene co-expression network

sample Hb_002851_050 Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_002851_050--Hb_000994_090 Hb_000426_060 Hb_000426_060 Hb_002851_050--Hb_000426_060 Hb_000426_070 Hb_000426_070 Hb_002851_050--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_002851_050--Hb_000592_040 Hb_000499_050 Hb_000499_050 Hb_002851_050--Hb_000499_050 Hb_001405_180 Hb_001405_180 Hb_002851_050--Hb_001405_180 Hb_000994_090--Hb_000426_070 Hb_000994_090--Hb_000592_040 Hb_000994_090--Hb_000426_060 Hb_000994_090--Hb_000499_050 Hb_000994_090--Hb_001405_180 Hb_000426_060--Hb_000426_070 Hb_000426_060--Hb_000592_040 Hb_000426_060--Hb_001405_180 Hb_039757_010 Hb_039757_010 Hb_000426_060--Hb_039757_010 Hb_000426_070--Hb_000592_040 Hb_000426_070--Hb_000499_050 Hb_117335_020 Hb_117335_020 Hb_000426_070--Hb_117335_020 Hb_000592_040--Hb_000499_050 Hb_000592_040--Hb_117335_020 Hb_000499_050--Hb_000426_060 Hb_000499_050--Hb_117335_020 Hb_001405_180--Hb_039757_010 Hb_001405_180--Hb_000426_070 Hb_001405_180--Hb_000592_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.71964 0 0.511753 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis