Hb_163950_060

Information

Type -
Description -
Location Contig163950: 56846-58495
Sequence    

Annotation

kegg
ID rcu:RCOM_1497400
description multidrug resistance pump, putative
nr
ID XP_002510841.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q8RWF5
description MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1
trembl
ID B9R9G6
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1497400 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein lal5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163950_060 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_011980_020 0.0373113039 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000336_170 0.0624202422 - - Polcalcin Jun o, putative [Ricinus communis]
4 Hb_007943_040 0.0641449905 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
5 Hb_008978_010 0.0673057004 - - transmembrane receptor, putative [Ricinus communis]
6 Hb_186671_020 0.0702835478 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_005687_020 0.0740292815 - - P66 protein [Hevea brasiliensis]
8 Hb_004096_040 0.0768688235 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001796_010 0.0796781367 - - purine transporter, putative [Ricinus communis]
10 Hb_027556_080 0.0847024521 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
11 Hb_000261_540 0.0905352478 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
12 Hb_000395_160 0.0944157332 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
13 Hb_009897_030 0.1005052675 - - -
14 Hb_018609_010 0.1009517953 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000979_270 0.1033706082 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
16 Hb_000004_150 0.1058185938 - - hypothetical protein RCOM_1382630 [Ricinus communis]
17 Hb_000007_170 0.1058185938 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
18 Hb_000010_280 0.1058185938 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
19 Hb_000022_220 0.1058185938 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
20 Hb_000045_120 0.1058185938 - - hypothetical protein JCGZ_01307 [Jatropha curcas]

Gene co-expression network

sample Hb_163950_060 Hb_163950_060 Hb_011980_020 Hb_011980_020 Hb_163950_060--Hb_011980_020 Hb_000336_170 Hb_000336_170 Hb_163950_060--Hb_000336_170 Hb_007943_040 Hb_007943_040 Hb_163950_060--Hb_007943_040 Hb_008978_010 Hb_008978_010 Hb_163950_060--Hb_008978_010 Hb_186671_020 Hb_186671_020 Hb_163950_060--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_163950_060--Hb_005687_020 Hb_011980_020--Hb_007943_040 Hb_011980_020--Hb_005687_020 Hb_011980_020--Hb_000336_170 Hb_001796_010 Hb_001796_010 Hb_011980_020--Hb_001796_010 Hb_011980_020--Hb_008978_010 Hb_000261_540 Hb_000261_540 Hb_000336_170--Hb_000261_540 Hb_000336_170--Hb_007943_040 Hb_000336_170--Hb_008978_010 Hb_009897_030 Hb_009897_030 Hb_000336_170--Hb_009897_030 Hb_007943_040--Hb_009897_030 Hb_007943_040--Hb_000261_540 Hb_013057_010 Hb_013057_010 Hb_007943_040--Hb_013057_010 Hb_000333_150 Hb_000333_150 Hb_008978_010--Hb_000333_150 Hb_008978_010--Hb_186671_020 Hb_008978_010--Hb_000261_540 Hb_186671_020--Hb_001796_010 Hb_018609_010 Hb_018609_010 Hb_186671_020--Hb_018609_010 Hb_005050_010 Hb_005050_010 Hb_186671_020--Hb_005050_010 Hb_000395_160 Hb_000395_160 Hb_186671_020--Hb_000395_160 Hb_000979_270 Hb_000979_270 Hb_186671_020--Hb_000979_270 Hb_005687_020--Hb_000395_160 Hb_004096_040 Hb_004096_040 Hb_005687_020--Hb_004096_040 Hb_005687_020--Hb_186671_020 Hb_005687_020--Hb_001796_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 117.541 0.178281 2.35921 0 0.0229208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.017568 0.092537

CAGE analysis