Hb_006519_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig6519: 8161-13403
Sequence    

Annotation

kegg
ID vvi:100248066
description probable disease resistance protein At4g27220
nr
ID XP_010660277.1
description PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
swissprot
ID O64789
description Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1
trembl
ID A5C6R2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007222 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nb-arc domain-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52577: 8268-9193 , PASA_asmbl_52578: 9657-10161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006519_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
2 Hb_000959_290 0.0529408218 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
3 Hb_001190_020 0.0577123187 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_004994_070 0.0591453644 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
5 Hb_093204_010 0.0740644838 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004767_040 0.0860566534 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
7 Hb_002572_060 0.0882957854 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010368_040 0.0944231692 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000333_150 0.0945686247 - - hypothetical protein RCOM_0711500 [Ricinus communis]
10 Hb_000261_540 0.1050992144 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
11 Hb_027913_010 0.1065204426 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_004059_010 0.1069218358 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_000336_170 0.1082024254 - - Polcalcin Jun o, putative [Ricinus communis]
14 Hb_011111_010 0.1094448534 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
15 Hb_078477_010 0.1097421763 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
16 Hb_009897_030 0.112179936 - - -
17 Hb_039757_010 0.1151876664 - - -
18 Hb_001405_180 0.1163219081 - - zinc finger protein, putative [Ricinus communis]
19 Hb_022630_010 0.1231066684 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
20 Hb_013057_010 0.1234708765 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]

Gene co-expression network

sample Hb_006519_010 Hb_006519_010 Hb_000959_290 Hb_000959_290 Hb_006519_010--Hb_000959_290 Hb_001190_020 Hb_001190_020 Hb_006519_010--Hb_001190_020 Hb_004994_070 Hb_004994_070 Hb_006519_010--Hb_004994_070 Hb_093204_010 Hb_093204_010 Hb_006519_010--Hb_093204_010 Hb_004767_040 Hb_004767_040 Hb_006519_010--Hb_004767_040 Hb_002572_060 Hb_002572_060 Hb_006519_010--Hb_002572_060 Hb_000959_290--Hb_004994_070 Hb_000959_290--Hb_001190_020 Hb_000959_290--Hb_002572_060 Hb_000959_290--Hb_093204_010 Hb_000333_150 Hb_000333_150 Hb_000959_290--Hb_000333_150 Hb_010368_040 Hb_010368_040 Hb_001190_020--Hb_010368_040 Hb_027913_010 Hb_027913_010 Hb_001190_020--Hb_027913_010 Hb_004059_010 Hb_004059_010 Hb_001190_020--Hb_004059_010 Hb_001190_020--Hb_004994_070 Hb_004994_070--Hb_093204_010 Hb_004994_070--Hb_000333_150 Hb_011111_010 Hb_011111_010 Hb_004994_070--Hb_011111_010 Hb_004994_070--Hb_002572_060 Hb_093204_010--Hb_011111_010 Hb_093204_010--Hb_004767_040 Hb_093204_010--Hb_002572_060 Hb_039757_010 Hb_039757_010 Hb_004767_040--Hb_039757_010 Hb_001405_180 Hb_001405_180 Hb_004767_040--Hb_001405_180 Hb_009897_030 Hb_009897_030 Hb_004767_040--Hb_009897_030 Hb_000426_060 Hb_000426_060 Hb_004767_040--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_004767_040--Hb_002851_050 Hb_000610_030 Hb_000610_030 Hb_002572_060--Hb_000610_030 Hb_013726_100 Hb_013726_100 Hb_002572_060--Hb_013726_100 Hb_011671_290 Hb_011671_290 Hb_002572_060--Hb_011671_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0112418 176.118 2.93263 13.84 0.00908194 0.0158683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.77231 0

CAGE analysis