Hb_000610_030

Information

Type -
Description -
Location Contig610: 2703-6427
Sequence    

Annotation

kegg
ID mtr:MTR_3g114410
description Subtilisin-like serine protease
nr
ID EYU17578.1
description hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
swissprot
ID Q84WS0
description Subtilisin-like protease SBT1.1 OS=Arabidopsis thaliana GN=SBTI1.1 PE=1 SV=1
trembl
ID A0A0D3H870
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0005618
description co -response secreted protease-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50974: 1030-42527 , PASA_asmbl_50979: 6007-6207
cDNA
(Sanger)
(ID:Location)		 044_C18r.ab1: 2659-3007

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000610_030 0.0 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
2 Hb_011671_290 0.0688229142 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
3 Hb_002572_060 0.0711297653 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013726_100 0.0849750119 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
5 Hb_000256_050 0.0969904355 - - chitinase, putative [Ricinus communis]
6 Hb_002475_110 0.1020139473 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
7 Hb_001623_020 0.1071729023 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
8 Hb_025477_030 0.1098905651 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
9 Hb_011805_060 0.1121347948 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_093204_010 0.1149898589 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004767_040 0.1155971395 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
12 Hb_004994_070 0.1198020141 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
13 Hb_000959_290 0.1201306838 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
14 Hb_006519_010 0.1244764601 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
15 Hb_011111_010 0.1285870405 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
16 Hb_027214_060 0.1290413078 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
17 Hb_143232_020 0.1299126395 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
18 Hb_009393_010 0.130304127 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
19 Hb_008931_020 0.1312312067 - - Receptor like protein 46, putative [Theobroma cacao]
20 Hb_002311_490 0.1323267687 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]

Gene co-expression network

sample Hb_000610_030 Hb_000610_030 Hb_011671_290 Hb_011671_290 Hb_000610_030--Hb_011671_290 Hb_002572_060 Hb_002572_060 Hb_000610_030--Hb_002572_060 Hb_013726_100 Hb_013726_100 Hb_000610_030--Hb_013726_100 Hb_000256_050 Hb_000256_050 Hb_000610_030--Hb_000256_050 Hb_002475_110 Hb_002475_110 Hb_000610_030--Hb_002475_110 Hb_001623_020 Hb_001623_020 Hb_000610_030--Hb_001623_020 Hb_011671_290--Hb_002572_060 Hb_008931_020 Hb_008931_020 Hb_011671_290--Hb_008931_020 Hb_000959_290 Hb_000959_290 Hb_011671_290--Hb_000959_290 Hb_000414_100 Hb_000414_100 Hb_011671_290--Hb_000414_100 Hb_004994_070 Hb_004994_070 Hb_011671_290--Hb_004994_070 Hb_002572_060--Hb_000959_290 Hb_002572_060--Hb_013726_100 Hb_093204_010 Hb_093204_010 Hb_002572_060--Hb_093204_010 Hb_002572_060--Hb_004994_070 Hb_013726_100--Hb_002475_110 Hb_013726_100--Hb_000256_050 Hb_013726_100--Hb_001623_020 Hb_025477_030 Hb_025477_030 Hb_013726_100--Hb_025477_030 Hb_009683_060 Hb_009683_060 Hb_013726_100--Hb_009683_060 Hb_000256_050--Hb_001623_020 Hb_000256_050--Hb_002475_110 Hb_000256_050--Hb_002572_060 Hb_167802_010 Hb_167802_010 Hb_000256_050--Hb_167802_010 Hb_009393_010 Hb_009393_010 Hb_000256_050--Hb_009393_010 Hb_027214_060 Hb_027214_060 Hb_002475_110--Hb_027214_060 Hb_000227_410 Hb_000227_410 Hb_002475_110--Hb_000227_410 Hb_002475_110--Hb_025477_030 Hb_002475_110--Hb_001623_020 Hb_000904_090 Hb_000904_090 Hb_002475_110--Hb_000904_090 Hb_104855_020 Hb_104855_020 Hb_001623_020--Hb_104855_020 Hb_143232_020 Hb_143232_020 Hb_001623_020--Hb_143232_020 Hb_001623_020--Hb_009683_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0760306 14.9723 0.484796 1.97775 0.0109806 0.0217712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0266827 0.0209934 0.0792691 0.0167304 0.044153

CAGE analysis