Hb_002475_110

Information

Type -
Description -
Location Contig2475: 98803-100164
Sequence    

Annotation

kegg
ID rcu:RCOM_0052090
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_002533474.1
description E3 ubiquitin ligase PUB14, putative [Ricinus communis]
swissprot
ID Q5PNY6
description U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1
trembl
ID B9T5F5
description E3 ubiquitin ligase PUB14, putative OS=Ricinus communis GN=RCOM_0052090 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 21-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25738: 99266-99435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_110 0.0 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
2 Hb_013726_100 0.0431215895 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
3 Hb_027214_060 0.0671588834 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
4 Hb_000227_410 0.0690640368 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
5 Hb_025477_030 0.0723128501 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
6 Hb_001623_020 0.0765748734 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
7 Hb_000904_090 0.0797126567 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
8 Hb_000256_050 0.0834946548 - - chitinase, putative [Ricinus communis]
9 Hb_009683_060 0.0861185862 - - -
10 Hb_167802_010 0.08754647 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
11 Hb_002572_060 0.0883636524 - - conserved hypothetical protein [Ricinus communis]
12 Hb_104855_020 0.0939781088 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_009393_010 0.0960617176 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
14 Hb_000610_030 0.1020139473 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
15 Hb_147137_020 0.1020709807 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
16 Hb_010417_120 0.1062849454 - - conserved hypothetical protein [Ricinus communis]
17 Hb_143232_020 0.1076756879 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
18 Hb_011805_060 0.1087529516 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
19 Hb_001168_100 0.1126408201 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
20 Hb_025477_020 0.1157622622 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]

Gene co-expression network

sample Hb_002475_110 Hb_002475_110 Hb_013726_100 Hb_013726_100 Hb_002475_110--Hb_013726_100 Hb_027214_060 Hb_027214_060 Hb_002475_110--Hb_027214_060 Hb_000227_410 Hb_000227_410 Hb_002475_110--Hb_000227_410 Hb_025477_030 Hb_025477_030 Hb_002475_110--Hb_025477_030 Hb_001623_020 Hb_001623_020 Hb_002475_110--Hb_001623_020 Hb_000904_090 Hb_000904_090 Hb_002475_110--Hb_000904_090 Hb_000256_050 Hb_000256_050 Hb_013726_100--Hb_000256_050 Hb_013726_100--Hb_001623_020 Hb_002572_060 Hb_002572_060 Hb_013726_100--Hb_002572_060 Hb_013726_100--Hb_025477_030 Hb_009683_060 Hb_009683_060 Hb_013726_100--Hb_009683_060 Hb_027214_060--Hb_000227_410 Hb_073870_020 Hb_073870_020 Hb_027214_060--Hb_073870_020 Hb_147137_020 Hb_147137_020 Hb_027214_060--Hb_147137_020 Hb_027214_060--Hb_000904_090 Hb_000347_360 Hb_000347_360 Hb_027214_060--Hb_000347_360 Hb_000227_410--Hb_000904_090 Hb_000227_410--Hb_000347_360 Hb_031862_150 Hb_031862_150 Hb_000227_410--Hb_031862_150 Hb_048538_010 Hb_048538_010 Hb_000227_410--Hb_048538_010 Hb_009393_010 Hb_009393_010 Hb_025477_030--Hb_009393_010 Hb_167802_010 Hb_167802_010 Hb_025477_030--Hb_167802_010 Hb_000134_010 Hb_000134_010 Hb_025477_030--Hb_000134_010 Hb_025477_030--Hb_000904_090 Hb_001623_020--Hb_000256_050 Hb_104855_020 Hb_104855_020 Hb_001623_020--Hb_104855_020 Hb_143232_020 Hb_143232_020 Hb_001623_020--Hb_143232_020 Hb_001623_020--Hb_009683_060 Hb_000904_090--Hb_009683_060 Hb_000904_090--Hb_104855_020 Hb_000904_090--Hb_048538_010 Hb_000904_090--Hb_167802_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 166.91 11.4248 27.516 0 0.0425099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.069857 0.0549553 0.0514221 0.87868 0.97305

CAGE analysis