Hb_000414_100

Information

Type -
Description -
Location Contig414: 152190-152576
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17500g
description POPTRDRAFT_713198; hypothetical protein
nr
ID XP_012084384.1
description PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9H147
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17500g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_100 0.0 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
2 Hb_033153_010 0.0964795916 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
3 Hb_011671_290 0.1069475222 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
4 Hb_174829_040 0.1113589484 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
5 Hb_116349_050 0.1163523667 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
6 Hb_001437_200 0.1173197624 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
7 Hb_002572_060 0.128329812 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008931_020 0.1296358428 - - Receptor like protein 46, putative [Theobroma cacao]
9 Hb_000959_290 0.1310255839 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
10 Hb_002311_490 0.1317660552 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
11 Hb_000039_100 0.1326059957 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
12 Hb_001190_020 0.1330908466 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_005588_010 0.1340493088 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
14 Hb_002760_060 0.1350423971 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
15 Hb_000563_460 0.1355360059 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
16 Hb_027214_060 0.1360757451 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
17 Hb_001031_020 0.1362531394 - - hypothetical protein VITISV_000631 [Vitis vinifera]
18 Hb_000610_030 0.1396571891 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
19 Hb_005081_060 0.1401523214 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
20 Hb_000563_380 0.1401739431 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]

Gene co-expression network

sample Hb_000414_100 Hb_000414_100 Hb_033153_010 Hb_033153_010 Hb_000414_100--Hb_033153_010 Hb_011671_290 Hb_011671_290 Hb_000414_100--Hb_011671_290 Hb_174829_040 Hb_174829_040 Hb_000414_100--Hb_174829_040 Hb_116349_050 Hb_116349_050 Hb_000414_100--Hb_116349_050 Hb_001437_200 Hb_001437_200 Hb_000414_100--Hb_001437_200 Hb_002572_060 Hb_002572_060 Hb_000414_100--Hb_002572_060 Hb_005648_030 Hb_005648_030 Hb_033153_010--Hb_005648_030 Hb_002760_060 Hb_002760_060 Hb_033153_010--Hb_002760_060 Hb_001405_260 Hb_001405_260 Hb_033153_010--Hb_001405_260 Hb_005588_010 Hb_005588_010 Hb_033153_010--Hb_005588_010 Hb_007850_050 Hb_007850_050 Hb_033153_010--Hb_007850_050 Hb_000610_030 Hb_000610_030 Hb_011671_290--Hb_000610_030 Hb_011671_290--Hb_002572_060 Hb_008931_020 Hb_008931_020 Hb_011671_290--Hb_008931_020 Hb_000959_290 Hb_000959_290 Hb_011671_290--Hb_000959_290 Hb_004994_070 Hb_004994_070 Hb_011671_290--Hb_004994_070 Hb_000142_010 Hb_000142_010 Hb_174829_040--Hb_000142_010 Hb_002042_190 Hb_002042_190 Hb_174829_040--Hb_002042_190 Hb_174829_040--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_174829_040--Hb_002311_490 Hb_000172_300 Hb_000172_300 Hb_174829_040--Hb_000172_300 Hb_116349_050--Hb_000172_300 Hb_116349_050--Hb_002042_190 Hb_048653_040 Hb_048653_040 Hb_116349_050--Hb_048653_040 Hb_000039_100 Hb_000039_100 Hb_116349_050--Hb_000039_100 Hb_004161_010 Hb_004161_010 Hb_001437_200--Hb_004161_010 Hb_027913_010 Hb_027913_010 Hb_001437_200--Hb_027913_010 Hb_004656_030 Hb_004656_030 Hb_001437_200--Hb_004656_030 Hb_003847_140 Hb_003847_140 Hb_001437_200--Hb_003847_140 Hb_005081_060 Hb_005081_060 Hb_001437_200--Hb_005081_060 Hb_001437_200--Hb_000039_100 Hb_002572_060--Hb_000959_290 Hb_002572_060--Hb_000610_030 Hb_013726_100 Hb_013726_100 Hb_002572_060--Hb_013726_100 Hb_093204_010 Hb_093204_010 Hb_002572_060--Hb_093204_010 Hb_002572_060--Hb_004994_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47467 547.393 16.729 47.2531 0.422328 2.9162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.31281 1.83627 0.528698 11.8112 13.0512

CAGE analysis