Hb_002042_190

Information

Type -
Description -
Location Contig2042: 168607-169869
Sequence    

Annotation

kegg
ID rcu:RCOM_1430830
description ring finger protein, putative
nr
ID XP_012089102.1
description PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
swissprot
ID Q8RXX9
description E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2
trembl
ID A0A067JVI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23377 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase atl6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_190 0.0 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
2 Hb_174829_040 0.0925368157 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
3 Hb_000142_010 0.1029468824 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
4 Hb_000172_300 0.1167400979 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
5 Hb_116349_050 0.1188297795 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
6 Hb_052113_020 0.1251858418 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
7 Hb_000210_150 0.1257180972 - - PREDICTED: protein YLS9-like [Jatropha curcas]
8 Hb_004531_010 0.1298003142 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
9 Hb_000627_140 0.130394265 - - ATP binding protein, putative [Ricinus communis]
10 Hb_075449_030 0.1383394275 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
11 Hb_001529_020 0.1392180072 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_004267_070 0.141028945 - - latex allene oxide synthase [Hevea brasiliensis]
13 Hb_000181_080 0.142621834 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
14 Hb_011928_030 0.1456983005 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
15 Hb_012702_010 0.1457708815 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
16 Hb_000347_370 0.1465870926 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
17 Hb_002311_490 0.1469143676 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
18 Hb_000336_160 0.147963165 - - ATP binding protein, putative [Ricinus communis]
19 Hb_001168_100 0.1524234557 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
20 Hb_000506_140 0.1575207047 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]

Gene co-expression network

sample Hb_002042_190 Hb_002042_190 Hb_174829_040 Hb_174829_040 Hb_002042_190--Hb_174829_040 Hb_000142_010 Hb_000142_010 Hb_002042_190--Hb_000142_010 Hb_000172_300 Hb_000172_300 Hb_002042_190--Hb_000172_300 Hb_116349_050 Hb_116349_050 Hb_002042_190--Hb_116349_050 Hb_052113_020 Hb_052113_020 Hb_002042_190--Hb_052113_020 Hb_000210_150 Hb_000210_150 Hb_002042_190--Hb_000210_150 Hb_174829_040--Hb_000142_010 Hb_174829_040--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_174829_040--Hb_002311_490 Hb_174829_040--Hb_000172_300 Hb_000414_100 Hb_000414_100 Hb_174829_040--Hb_000414_100 Hb_000142_010--Hb_116349_050 Hb_000142_010--Hb_002311_490 Hb_011416_020 Hb_011416_020 Hb_000142_010--Hb_011416_020 Hb_003053_060 Hb_003053_060 Hb_000142_010--Hb_003053_060 Hb_000039_100 Hb_000039_100 Hb_000172_300--Hb_000039_100 Hb_000172_300--Hb_116349_050 Hb_048653_040 Hb_048653_040 Hb_000172_300--Hb_048653_040 Hb_011054_030 Hb_011054_030 Hb_000172_300--Hb_011054_030 Hb_012702_010 Hb_012702_010 Hb_000172_300--Hb_012702_010 Hb_116349_050--Hb_000414_100 Hb_116349_050--Hb_048653_040 Hb_116349_050--Hb_000039_100 Hb_000506_130 Hb_000506_130 Hb_052113_020--Hb_000506_130 Hb_000245_270 Hb_000245_270 Hb_052113_020--Hb_000245_270 Hb_003800_010 Hb_003800_010 Hb_052113_020--Hb_003800_010 Hb_029238_020 Hb_029238_020 Hb_052113_020--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_052113_020--Hb_004143_050 Hb_025477_020 Hb_025477_020 Hb_000210_150--Hb_025477_020 Hb_004267_070 Hb_004267_070 Hb_000210_150--Hb_004267_070 Hb_035391_010 Hb_035391_010 Hb_000210_150--Hb_035391_010 Hb_158123_010 Hb_158123_010 Hb_000210_150--Hb_158123_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_000316_150 Hb_000316_150 Hb_000210_150--Hb_000316_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.943655 148.246 5.72713 32.8006 0.771468 0.924873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06883 1.80169 2.18409 10.4796 1.18402

CAGE analysis