Hb_000316_150

Information

Type -
Description -
Location Contig316: 149167-151166
Sequence    

Annotation

kegg
ID rcu:RCOM_1207360
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002530862.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID P52409
description Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1
trembl
ID B9SXY3
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1207360 PE=3 SV=1
Gene Ontology
ID GO:0005618
description glucan endo- -beta-glucosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33313: 149147-151042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000316_150 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_004324_290 0.1053528939 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
3 Hb_006483_050 0.1120820051 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
4 Hb_000210_150 0.1121285517 - - PREDICTED: protein YLS9-like [Jatropha curcas]
5 Hb_158123_010 0.1240982264 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_005882_020 0.1287212386 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
7 Hb_000574_120 0.1334231786 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002097_150 0.1541593497 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
9 Hb_000086_610 0.1552794553 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
10 Hb_055706_010 0.1563926095 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
11 Hb_002660_090 0.156786893 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
12 Hb_035391_010 0.1570108268 - - TMV resistance protein N, putative [Ricinus communis]
13 Hb_141990_050 0.1570926033 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
14 Hb_005568_060 0.1576194926 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
15 Hb_011287_020 0.1601046051 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000322_120 0.1608024127 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
17 Hb_000181_080 0.1644989496 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
18 Hb_000522_120 0.1650479777 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
19 Hb_000307_110 0.1663635732 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
20 Hb_000172_300 0.1682848857 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000316_150 Hb_000316_150 Hb_004324_290 Hb_004324_290 Hb_000316_150--Hb_004324_290 Hb_006483_050 Hb_006483_050 Hb_000316_150--Hb_006483_050 Hb_000210_150 Hb_000210_150 Hb_000316_150--Hb_000210_150 Hb_158123_010 Hb_158123_010 Hb_000316_150--Hb_158123_010 Hb_005882_020 Hb_005882_020 Hb_000316_150--Hb_005882_020 Hb_000574_120 Hb_000574_120 Hb_000316_150--Hb_000574_120 Hb_004324_290--Hb_000574_120 Hb_004787_100 Hb_004787_100 Hb_004324_290--Hb_004787_100 Hb_004324_290--Hb_158123_010 Hb_004324_290--Hb_006483_050 Hb_002217_270 Hb_002217_270 Hb_004324_290--Hb_002217_270 Hb_006483_050--Hb_158123_010 Hb_011287_020 Hb_011287_020 Hb_006483_050--Hb_011287_020 Hb_000016_220 Hb_000016_220 Hb_006483_050--Hb_000016_220 Hb_001846_040 Hb_001846_040 Hb_006483_050--Hb_001846_040 Hb_000322_020 Hb_000322_020 Hb_006483_050--Hb_000322_020 Hb_025477_020 Hb_025477_020 Hb_000210_150--Hb_025477_020 Hb_004267_070 Hb_004267_070 Hb_000210_150--Hb_004267_070 Hb_035391_010 Hb_035391_010 Hb_000210_150--Hb_035391_010 Hb_000210_150--Hb_158123_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_002311_490 Hb_002311_490 Hb_158123_010--Hb_002311_490 Hb_158123_010--Hb_011287_020 Hb_158123_010--Hb_035391_010 Hb_000465_330 Hb_000465_330 Hb_158123_010--Hb_000465_330 Hb_055706_010 Hb_055706_010 Hb_005882_020--Hb_055706_010 Hb_000322_120 Hb_000322_120 Hb_005882_020--Hb_000322_120 Hb_089140_020 Hb_089140_020 Hb_005882_020--Hb_089140_020 Hb_005882_020--Hb_000210_150 Hb_002660_090 Hb_002660_090 Hb_005882_020--Hb_002660_090 Hb_000072_330 Hb_000072_330 Hb_000574_120--Hb_000072_330 Hb_000574_120--Hb_004787_100 Hb_013057_030 Hb_013057_030 Hb_000574_120--Hb_013057_030 Hb_005725_190 Hb_005725_190 Hb_000574_120--Hb_005725_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63457 459.31 59.8822 45.8806 0.458538 0.457067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.51571 16.0684 14.743 12.9221 6.01548

CAGE analysis