Hb_004787_100

Information

Type -
Description -
Location Contig4787: 103197-105749
Sequence    

Annotation

kegg
ID rcu:RCOM_1514810
description DNA binding protein, putative
nr
ID XP_012080246.1
description PREDICTED: transcription factor bHLH47 [Jatropha curcas]
swissprot
ID Q9SN74
description Transcription factor bHLH47 OS=Arabidopsis thaliana GN=BHLH47 PE=2 SV=1
trembl
ID A0A067K4W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11612 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh47

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44594: 103206-105490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004787_100 0.0 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
2 Hb_005568_060 0.1051821575 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
3 Hb_002217_270 0.1147465544 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
4 Hb_004324_290 0.1239263762 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
5 Hb_000532_030 0.1364543812 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
6 Hb_000103_400 0.1407595533 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
7 Hb_006538_030 0.1409363838 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
8 Hb_181824_010 0.1418129552 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_000434_050 0.1423543535 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
10 Hb_000220_090 0.1550791936 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
11 Hb_000015_180 0.1561596926 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
12 Hb_000045_140 0.1577533965 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
13 Hb_002835_260 0.1608470728 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
14 Hb_010589_130 0.1609293544 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
15 Hb_185080_010 0.1642234829 - - -
16 Hb_000574_120 0.1652428579 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008246_090 0.1674085878 - - -
18 Hb_006483_050 0.1677032461 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
19 Hb_001846_040 0.1694232208 - - cytochrome P450, putative [Ricinus communis]
20 Hb_078901_010 0.1709738244 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_004787_100 Hb_004787_100 Hb_005568_060 Hb_005568_060 Hb_004787_100--Hb_005568_060 Hb_002217_270 Hb_002217_270 Hb_004787_100--Hb_002217_270 Hb_004324_290 Hb_004324_290 Hb_004787_100--Hb_004324_290 Hb_000532_030 Hb_000532_030 Hb_004787_100--Hb_000532_030 Hb_000103_400 Hb_000103_400 Hb_004787_100--Hb_000103_400 Hb_006538_030 Hb_006538_030 Hb_004787_100--Hb_006538_030 Hb_181824_010 Hb_181824_010 Hb_005568_060--Hb_181824_010 Hb_001846_040 Hb_001846_040 Hb_005568_060--Hb_001846_040 Hb_016404_010 Hb_016404_010 Hb_005568_060--Hb_016404_010 Hb_009247_020 Hb_009247_020 Hb_005568_060--Hb_009247_020 Hb_006483_050 Hb_006483_050 Hb_005568_060--Hb_006483_050 Hb_136886_010 Hb_136886_010 Hb_002217_270--Hb_136886_010 Hb_002217_270--Hb_005568_060 Hb_002217_270--Hb_004324_290 Hb_000434_050 Hb_000434_050 Hb_002217_270--Hb_000434_050 Hb_000015_180 Hb_000015_180 Hb_002217_270--Hb_000015_180 Hb_000574_120 Hb_000574_120 Hb_004324_290--Hb_000574_120 Hb_000316_150 Hb_000316_150 Hb_004324_290--Hb_000316_150 Hb_158123_010 Hb_158123_010 Hb_004324_290--Hb_158123_010 Hb_004324_290--Hb_006483_050 Hb_000532_030--Hb_006538_030 Hb_000045_140 Hb_000045_140 Hb_000532_030--Hb_000045_140 Hb_000283_100 Hb_000283_100 Hb_000532_030--Hb_000283_100 Hb_000805_150 Hb_000805_150 Hb_000532_030--Hb_000805_150 Hb_001863_270 Hb_001863_270 Hb_000532_030--Hb_001863_270 Hb_002272_140 Hb_002272_140 Hb_000103_400--Hb_002272_140 Hb_000181_080 Hb_000181_080 Hb_000103_400--Hb_000181_080 Hb_000473_080 Hb_000473_080 Hb_000103_400--Hb_000473_080 Hb_006414_020 Hb_006414_020 Hb_000103_400--Hb_006414_020 Hb_000359_080 Hb_000359_080 Hb_000103_400--Hb_000359_080 Hb_000803_060 Hb_000803_060 Hb_000103_400--Hb_000803_060 Hb_000345_500 Hb_000345_500 Hb_006538_030--Hb_000345_500 Hb_000836_160 Hb_000836_160 Hb_006538_030--Hb_000836_160 Hb_000086_610 Hb_000086_610 Hb_006538_030--Hb_000086_610 Hb_006043_020 Hb_006043_020 Hb_006538_030--Hb_006043_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6208 301.424 68.2622 27.942 6.19879 7.60407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.31203 16.5226 5.83661 11.3434 8.77115

CAGE analysis