Hb_000532_030

Information

Type -
Description -
Location Contig532: 49560-52036
Sequence    

Annotation

kegg
ID rcu:RCOM_1686390
description AMP dependent CoA ligase, putative (EC:6.2.1.26)
nr
ID XP_012086931.1
description PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
swissprot
ID Q9SMT7
description Oxalate--CoA ligase OS=Arabidopsis thaliana GN=AAE3 PE=1 SV=1
trembl
ID A0A067JRK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20609 PE=4 SV=1
Gene Ontology
ID GO:0009506
description 4-coumarate-- ligase-like 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47401: 49619-51834 , PASA_asmbl_47402: 49097-51857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000532_030 0.0 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
2 Hb_006538_030 0.092879266 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
3 Hb_000045_140 0.1154102509 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
4 Hb_000283_100 0.1253130768 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
5 Hb_000805_150 0.1274761682 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
6 Hb_001863_270 0.1317917804 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
7 Hb_004787_100 0.1364543812 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
8 Hb_000434_050 0.1387957908 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
9 Hb_181824_010 0.1402624119 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_000103_400 0.1420419509 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
11 Hb_001989_060 0.1425582537 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
12 Hb_002053_030 0.1427791089 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_000776_050 0.1440514545 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
14 Hb_001846_040 0.1449389906 - - cytochrome P450, putative [Ricinus communis]
15 Hb_007120_010 0.1466487862 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
16 Hb_000836_160 0.1475010773 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
17 Hb_000220_090 0.1485684477 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
18 Hb_000086_610 0.1488047588 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
19 Hb_000345_500 0.1497079408 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
20 Hb_002876_070 0.1508461396 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]

Gene co-expression network

sample Hb_000532_030 Hb_000532_030 Hb_006538_030 Hb_006538_030 Hb_000532_030--Hb_006538_030 Hb_000045_140 Hb_000045_140 Hb_000532_030--Hb_000045_140 Hb_000283_100 Hb_000283_100 Hb_000532_030--Hb_000283_100 Hb_000805_150 Hb_000805_150 Hb_000532_030--Hb_000805_150 Hb_001863_270 Hb_001863_270 Hb_000532_030--Hb_001863_270 Hb_004787_100 Hb_004787_100 Hb_000532_030--Hb_004787_100 Hb_000345_500 Hb_000345_500 Hb_006538_030--Hb_000345_500 Hb_000836_160 Hb_000836_160 Hb_006538_030--Hb_000836_160 Hb_000086_610 Hb_000086_610 Hb_006538_030--Hb_000086_610 Hb_006043_020 Hb_006043_020 Hb_006538_030--Hb_006043_020 Hb_006538_030--Hb_004787_100 Hb_181824_010 Hb_181824_010 Hb_000045_140--Hb_181824_010 Hb_000045_140--Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_000045_140--Hb_010126_030 Hb_001989_060 Hb_001989_060 Hb_000045_140--Hb_001989_060 Hb_007120_010 Hb_007120_010 Hb_000045_140--Hb_007120_010 Hb_000283_100--Hb_010126_030 Hb_000283_100--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_000283_100--Hb_004586_130 Hb_000680_180 Hb_000680_180 Hb_000283_100--Hb_000680_180 Hb_000336_060 Hb_000336_060 Hb_000283_100--Hb_000336_060 Hb_000245_270 Hb_000245_270 Hb_000805_150--Hb_000245_270 Hb_078901_010 Hb_078901_010 Hb_000805_150--Hb_078901_010 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150 Hb_000805_040 Hb_000805_040 Hb_001863_270--Hb_000805_040 Hb_001863_270--Hb_007120_010 Hb_001863_270--Hb_001989_060 Hb_000373_250 Hb_000373_250 Hb_001863_270--Hb_000373_250 Hb_011360_090 Hb_011360_090 Hb_001863_270--Hb_011360_090 Hb_002053_030 Hb_002053_030 Hb_001863_270--Hb_002053_030 Hb_005568_060 Hb_005568_060 Hb_004787_100--Hb_005568_060 Hb_002217_270 Hb_002217_270 Hb_004787_100--Hb_002217_270 Hb_004324_290 Hb_004324_290 Hb_004787_100--Hb_004324_290 Hb_000103_400 Hb_000103_400 Hb_004787_100--Hb_000103_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5903 728.512 238.551 169.381 15.083 11.9526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6816 34.1708 45.5857 25.1893 22.9284

CAGE analysis