Hb_005568_060

Information

Type -
Description -
Location Contig5568: 76439-80059
Sequence    

Annotation

kegg
ID mdm:103429992
description mitogen-activated protein kinase 3
nr
ID XP_012064908.1
description PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
swissprot
ID Q39023
description Mitogen-activated protein kinase 3 OS=Arabidopsis thaliana GN=MPK3 PE=1 SV=2
trembl
ID A0A067LA83
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_05600 PE=3 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48570: 76154-80052 , PASA_asmbl_48571: 77343-77724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_060 0.0 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
2 Hb_181824_010 0.1001384605 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_001846_040 0.1038700558 - - cytochrome P450, putative [Ricinus communis]
4 Hb_004787_100 0.1051821575 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
5 Hb_016404_010 0.1118951104 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_009247_020 0.1184044478 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
7 Hb_006483_050 0.1329779683 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
8 Hb_011287_020 0.1343285135 - - ATP binding protein, putative [Ricinus communis]
9 Hb_035391_010 0.1407848935 - - TMV resistance protein N, putative [Ricinus communis]
10 Hb_000045_140 0.1411875577 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
11 Hb_000230_210 0.1414319125 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
12 Hb_138628_010 0.1417610176 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_136027_010 0.1455010557 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_000103_400 0.1493450676 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
15 Hb_158123_010 0.1519677395 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_102100_010 0.1529243914 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_002217_270 0.1567952729 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
18 Hb_010589_130 0.1569843363 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
19 Hb_000316_150 0.1576194926 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_004324_290 0.158072907 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]

Gene co-expression network

sample Hb_005568_060 Hb_005568_060 Hb_181824_010 Hb_181824_010 Hb_005568_060--Hb_181824_010 Hb_001846_040 Hb_001846_040 Hb_005568_060--Hb_001846_040 Hb_004787_100 Hb_004787_100 Hb_005568_060--Hb_004787_100 Hb_016404_010 Hb_016404_010 Hb_005568_060--Hb_016404_010 Hb_009247_020 Hb_009247_020 Hb_005568_060--Hb_009247_020 Hb_006483_050 Hb_006483_050 Hb_005568_060--Hb_006483_050 Hb_033149_020 Hb_033149_020 Hb_181824_010--Hb_033149_020 Hb_181824_010--Hb_001846_040 Hb_000045_140 Hb_000045_140 Hb_181824_010--Hb_000045_140 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010 Hb_011287_020 Hb_011287_020 Hb_001846_040--Hb_011287_020 Hb_019654_010 Hb_019654_010 Hb_001846_040--Hb_019654_010 Hb_001846_040--Hb_006483_050 Hb_035391_010 Hb_035391_010 Hb_001846_040--Hb_035391_010 Hb_002217_270 Hb_002217_270 Hb_004787_100--Hb_002217_270 Hb_004324_290 Hb_004324_290 Hb_004787_100--Hb_004324_290 Hb_000532_030 Hb_000532_030 Hb_004787_100--Hb_000532_030 Hb_000103_400 Hb_000103_400 Hb_004787_100--Hb_000103_400 Hb_006538_030 Hb_006538_030 Hb_004787_100--Hb_006538_030 Hb_136027_010 Hb_136027_010 Hb_016404_010--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_016404_010--Hb_000506_140 Hb_000796_200 Hb_000796_200 Hb_016404_010--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_016404_010--Hb_002311_490 Hb_000465_330 Hb_000465_330 Hb_016404_010--Hb_000465_330 Hb_009247_020--Hb_136027_010 Hb_009189_010 Hb_009189_010 Hb_009247_020--Hb_009189_010 Hb_001411_150 Hb_001411_150 Hb_009247_020--Hb_001411_150 Hb_000563_460 Hb_000563_460 Hb_009247_020--Hb_000563_460 Hb_009247_020--Hb_016404_010 Hb_158123_010 Hb_158123_010 Hb_006483_050--Hb_158123_010 Hb_006483_050--Hb_011287_020 Hb_000316_150 Hb_000316_150 Hb_006483_050--Hb_000316_150 Hb_000016_220 Hb_000016_220 Hb_006483_050--Hb_000016_220 Hb_000322_020 Hb_000322_020 Hb_006483_050--Hb_000322_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5191 856.271 181.708 91.8377 18.0166 21.7445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.11767 18.4624 7.12802 33.187 13.1704

CAGE analysis