Hb_001846_040

Information

Type -
Description -
Location Contig1846: 101122-102624
Sequence    

Annotation

kegg
ID rcu:RCOM_0992750
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_002521002.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID O81117
description Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2
trembl
ID B9S4U5
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0992750 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 cyp94a1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18071: 100914-102680 , PASA_asmbl_18073: 101367-124461
cDNA
(Sanger)
(ID:Location)		 050_H07.ab1: 102124-102680

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001846_040 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_011287_020 0.079728028 - - ATP binding protein, putative [Ricinus communis]
3 Hb_019654_010 0.0994809648 - - multicopper oxidase, putative [Ricinus communis]
4 Hb_005568_060 0.1038700558 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
5 Hb_181824_010 0.1077187556 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_006483_050 0.1182811377 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
7 Hb_035391_010 0.1204044217 - - TMV resistance protein N, putative [Ricinus communis]
8 Hb_016404_010 0.1206999738 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_136027_010 0.1229085281 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_003582_020 0.1229416009 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
11 Hb_000045_140 0.1259357963 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
12 Hb_009476_010 0.128488056 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
13 Hb_000086_610 0.1297043595 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
14 Hb_158123_010 0.1335044628 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_029622_080 0.1352016921 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
16 Hb_001289_030 0.1364185156 - - syntaxin, plant, putative [Ricinus communis]
17 Hb_009247_020 0.1377180697 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
18 Hb_000230_210 0.1431811891 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
19 Hb_005618_020 0.1440937293 - - hypothetical protein RCOM_1342750 [Ricinus communis]
20 Hb_000805_150 0.1448465376 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001846_040 Hb_001846_040 Hb_011287_020 Hb_011287_020 Hb_001846_040--Hb_011287_020 Hb_019654_010 Hb_019654_010 Hb_001846_040--Hb_019654_010 Hb_005568_060 Hb_005568_060 Hb_001846_040--Hb_005568_060 Hb_181824_010 Hb_181824_010 Hb_001846_040--Hb_181824_010 Hb_006483_050 Hb_006483_050 Hb_001846_040--Hb_006483_050 Hb_035391_010 Hb_035391_010 Hb_001846_040--Hb_035391_010 Hb_009476_010 Hb_009476_010 Hb_011287_020--Hb_009476_010 Hb_011287_020--Hb_006483_050 Hb_001477_080 Hb_001477_080 Hb_011287_020--Hb_001477_080 Hb_000805_150 Hb_000805_150 Hb_011287_020--Hb_000805_150 Hb_011287_020--Hb_019654_010 Hb_019654_010--Hb_001477_080 Hb_003582_020 Hb_003582_020 Hb_019654_010--Hb_003582_020 Hb_001289_030 Hb_001289_030 Hb_019654_010--Hb_001289_030 Hb_002922_010 Hb_002922_010 Hb_019654_010--Hb_002922_010 Hb_005568_060--Hb_181824_010 Hb_004787_100 Hb_004787_100 Hb_005568_060--Hb_004787_100 Hb_016404_010 Hb_016404_010 Hb_005568_060--Hb_016404_010 Hb_009247_020 Hb_009247_020 Hb_005568_060--Hb_009247_020 Hb_005568_060--Hb_006483_050 Hb_033149_020 Hb_033149_020 Hb_181824_010--Hb_033149_020 Hb_000045_140 Hb_000045_140 Hb_181824_010--Hb_000045_140 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010 Hb_158123_010 Hb_158123_010 Hb_006483_050--Hb_158123_010 Hb_000316_150 Hb_000316_150 Hb_006483_050--Hb_000316_150 Hb_000016_220 Hb_000016_220 Hb_006483_050--Hb_000016_220 Hb_000322_020 Hb_000322_020 Hb_006483_050--Hb_000322_020 Hb_035391_010--Hb_003582_020 Hb_000210_150 Hb_000210_150 Hb_035391_010--Hb_000210_150 Hb_025477_020 Hb_025477_020 Hb_035391_010--Hb_025477_020 Hb_055706_010 Hb_055706_010 Hb_035391_010--Hb_055706_010 Hb_136027_010 Hb_136027_010 Hb_035391_010--Hb_136027_010 Hb_002311_490 Hb_002311_490 Hb_035391_010--Hb_002311_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.66682 581.328 152.569 109.763 8.29544 4.45367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89169 4.60831 7.23098 22.562 5.69267

CAGE analysis